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GEO accession:
Sample GSM849355
Query DataSets for GSM849355
Status
Public on Dec 16, 2011
Title
RIKEN_Cage_H1-hESC_cell_longNonPolyA
Sample type
SRA
Source name
H1-hESC
Organism
Homo sapiens
Characteristics
datatype: Cage
datatype description: CAGE 5' RNA Tags
rnaextract: longNonPolyA
rnaextract description: Poly(A)- RNA longer than 200 nt
biorep: gen0113WC
labexpid: I67
softwareversion: bedtools v2.7.1
cell karyotype: normal
cell lineage: inner cell mass
cell sex: M
localization: cell
localization description: Whole cell
rnaextract: longNonPolyA
rnaextract description: Poly(A)- RNA longer than 200 nt
biorep: gen0113WC
labexpid: I67
softwareversion: Delve version 0.9
Biomaterial provider
WiCell Research Institute
Growth protocol
missing
Extracted molecule
total RNA
Extraction protocol
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeRikenCage
Library strategy
RNA-Seq
Library source
transcriptomic
Library selection
CAGE
Instrument model
Illumina Genome Analyzer
Data processing
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeRikenCage
Submission date
Dec 14, 2011
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL9052
Series (1)
GSE34448
RNA Subcellular CAGE Localization from ENCODE/RIKEN
Relations
SRA
SRX111953
BioSample
SAMN00766265
Named Annotation
GSM849355_hg19_wgEncodeRikenCageH1hescCellPamMinusSignal.bigWig
Named Annotation
GSM849355_hg19_wgEncodeRikenCageH1hescCellPamPlusSignal.bigWig
Supplementary file
Size
Download
File type/resource
GSM849355_hg19_wgEncodeRikenCageH1hescCellPamClusters.bed.gz
10.9 Mb
(ftp)
(http)
BED
GSM849355_hg19_wgEncodeRikenCageH1hescCellPamMinusSignal.bigWig
6.5 Mb
(ftp)
(http)
BIGWIG
GSM849355_hg19_wgEncodeRikenCageH1hescCellPamPlusSignal.bigWig
9.1 Mb
(ftp)
(http)
BIGWIG
GSM849355_hg19_wgEncodeRikenCageH1hescCellPamTssGencV7.gtf.gz
2.7 Mb
(ftp)
(http)
GTF
GSM849355_hg19_wgEncodeRikenCageH1hescCellPamTssHmm.bedRnaElements.gz
4.3 Mb
(ftp)
(http)
BEDRNAELEMENTS
GSM849355_hg19_wgEncodeRikenCageH1hescCellPamTssHmmV2.bedRnaElements.gz
4.4 Mb
(ftp)
(http)
BEDRNAELEMENTS
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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