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GEO accession:
Sample GSM849356
Query DataSets for GSM849356
Status
Public on Dec 16, 2011
Title
RIKEN_Cage_H1-hESC_cytosol_longPolyA
Sample type
SRA
Source name
H1-hESC
Organism
Homo sapiens
Characteristics
datatype: Cage
datatype description: CAGE 5' RNA Tags
rnaextract: longPolyA
rnaextract description: Poly(A)+ RNA longer than 200 nt
biorep: 006C
labexpid: J86
readtype: 1x36
readtype description: Single 36 nt reads
cell lineage: inner cell mass
cell sex: M
localization: cytosol
localization description: The fluid between the cells outer membrane and the nucleus
rnaextract: longPolyA
rnaextract description: Poly(A)+ RNA longer than 200 nt
biorep: 006C
labexpid: J86
replicate: 2
replicate description: tier 2
Biomaterial provider
WiCell Research Institute
Growth protocol
missing
Extracted molecule
polyA RNA
Extraction protocol
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeRikenCage
Library strategy
RNA-Seq
Library source
transcriptomic
Library selection
CAGE
Instrument model
Illumina Genome Analyzer IIx
Data processing
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeRikenCage
Submission date
Dec 14, 2011
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL10999
Series (1)
GSE34448
RNA Subcellular CAGE Localization from ENCODE/RIKEN
Relations
SRA
SRX111954
BioSample
SAMN00766266
Named Annotation
GSM849356_hg19_wgEncodeRikenCageH1hescCytosolPapMinusSignalRep2.bigWig
Named Annotation
GSM849356_hg19_wgEncodeRikenCageH1hescCytosolPapPlusSignalRep2.bigWig
Supplementary file
Size
Download
File type/resource
GSM849356_hg19_wgEncodeRikenCageH1hescCytosolPapClusters.bed.gz
9.3 Mb
(ftp)
(http)
BED
GSM849356_hg19_wgEncodeRikenCageH1hescCytosolPapMinusSignalRep2.bigWig
5.1 Mb
(ftp)
(http)
BIGWIG
GSM849356_hg19_wgEncodeRikenCageH1hescCytosolPapPlusSignalRep2.bigWig
5.1 Mb
(ftp)
(http)
BIGWIG
GSM849356_hg19_wgEncodeRikenCageH1hescCytosolPapTssHmm.bedRnaElements.gz
1.1 Mb
(ftp)
(http)
BEDRNAELEMENTS
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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