|
| Status |
Public on Nov 14, 2012 |
| Title |
K-562 truseq 1000ng |
| Sample type |
SRA |
| |
|
| Source name |
K-562 cell line
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: immortalised chronic myelogenous leukemia (CML)
cell line: K562
sample type: K-562 truseq 1000ng
average insert size: 229
std. dev. insert size: 173.245305
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Illumina TruSeq RNA sample prep kit used with these changes: SuperScript III instead of SuperScript II & optimization of PCR cycle number
RNA purchased from Ambion/ABI
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Data processing |
All files were mapped against Hg19 using TopHat 1.1.4
|
| |
|
| Submission date |
Dec 27, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
Nataly Moran Cabili |
| E-mail(s) |
nmcabili@fas.harvard.edu
|
| Organization name |
Broad Institute ; Harvard University
|
| Street address |
7 Cambridge Center
|
| City |
Cambridge |
| State/province |
MA |
| ZIP/Postal code |
02142 |
| Country |
USA |
| |
|
| Platform ID |
GPL11154 |
| Series (1) |
|
| Relations |
| SRA |
SRX113649 |
| BioSample |
SAMN00769225 |
