|
Status |
Public on Nov 14, 2012 |
Title |
K-562 truseq 100ng |
Sample type |
SRA |
|
|
Source name |
K-562 cell line
|
Organism |
Homo sapiens |
Characteristics |
cell type: immortalised chronic myelogenous leukemia (CML) cell line: K562 sample type: K-562 truseq 100ng average insert size: 237 std. dev. insert size: 179.351572
|
Extracted molecule |
total RNA |
Extraction protocol |
Illumina TruSeq RNA sample prep kit used with these changes: SuperScript III instead of SuperScript II & optimization of PCR cycle number RNA purchased from Ambion/ABI
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2000 |
|
|
Data processing |
All files were mapped against Hg19 using TopHat 1.1.4
|
|
|
Submission date |
Dec 27, 2011 |
Last update date |
May 15, 2019 |
Contact name |
Nataly Moran Cabili |
E-mail(s) |
nmcabili@fas.harvard.edu
|
Organization name |
Broad Institute ; Harvard University
|
Street address |
7 Cambridge Center
|
City |
Cambridge |
State/province |
MA |
ZIP/Postal code |
02142 |
Country |
USA |
|
|
Platform ID |
GPL11154 |
Series (1) |
|
Relations |
SRA |
SRX113652 |
BioSample |
SAMN00769228 |