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GEO accession:
Sample GSM85617
Query DataSets for GSM85617
Status
Public on Jul 14, 2006
Title
BE-12
Sample type
SAGE
Anchor
NlaIII
Tag Count
88186
Tag Length
10
Source name
bronchial epithelium
Organism
Homo sapiens
Characteristics
bronchial epithelium
Extracted molecule
polyA RNA
Description
bronchial brushing
Submission date
Nov 30, 2005
Last update date
Nov 19, 2008
Contact name
Kim Marie Lonergan
E-mail(s)
klonergan@bccrc.ca
Phone
604-675-8111
Fax
604-675-8185
Organization name
British Columbia Cancer Research Centre
Department
Cancer Genetics and Developmental Biology
Lab
Dr. Wan L Lam
Street address
675 West 10th Avenue
City
Vancouver
State/province
British Columbia
ZIP/Postal code
V5Z 1L3
Country
Canada
Platform ID
GPL4
Series (2)
GSE3707
Expression profiling of bronchial epithelium
GSE3754
Identification of novel lung genes in bronchial epithelium by serial analysis of gene expression
Data table header descriptions
TAG
10 nucleotide unique SAGE tag sequence
COUNT
raw tag count
TPM
tags per million
Data table
TAG
COUNT
TPM
CTTTGAGTCC
3639
41265.05
CCTATCAGTA
1658
18801.17
ACTTTTTCAA
1112
12609.71
TTCATACACC
717
8130.54
AAAAAAAAAA
622
7053.27
TTGGGGTTTC
591
6701.74
GGCCCAGGCC
501
5681.17
CACCTAATTG
450
5102.85
CCCATCGTCC
448
5080.17
AGCCCTACAA
385
4365.77
CTCCACCCGA
384
4354.43
GTGATCAGCT
383
4343.09
GTTGTGGTTA
378
4286.39
TAGGTTGTCT
376
4263.72
TTCAATAAAA
373
4229.70
TTGGTCCTCT
338
3832.81
CTGTACAGAC
325
3685.39
AAGCTCGCCG
287
3254.48
ATAATTCTTT
261
2959.65
TCAGATCTTT
254
2880.28
Total number of rows:
26010
Table truncated, full table size
485 Kbytes
.
Supplementary data files not provided
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