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Sample GSM856364 Query DataSets for GSM856364
Status Public on Nov 27, 2012
Title 27240602
Sample type RNA
 
Source name ALL, total RNA
Organism Homo sapiens
Characteristics pathology: ALL
cytogenetics: BCR/ABL
immunophenotype: Early-Pre-B
site (pb: peripheral blood; BM: bone marrow): BM
age: 25
Sex: M
white blood count (wbc, 10^9/l):  8.3
%blasts: 85%
imatinib: neg
overall_survival(days):  292
code_os (dead_1):  1
hyperdiploid: neg
cd25(pos >=5%, neg <5%): 14
Extracted molecule total RNA
Extraction protocol Total RNA extracted with Qiagen's RNeasy Plus Mini kit from Qiagen (Valencia, CA), per manufacturer's instructions.
Label Cy3/532
Label protocol Random priming with 7-mers pre-labeled with either Cy3 or Cy5 according to manufacturer's instructions using the NimbleGen Dual-Color DNA Labeling Kit (cat # 06370381001)
 
Hybridization protocol See Roche NimbleGen website for the detailed manufacturers protocol.
Scan protocol Scanning was performed using NimbleGen MS 200 scanner
Description 13290
Data processing RMA normalization using the RMA algorithm in NimbleScan 2.5 software (Roche NimbleGen, Inc).
 
Submission date Jan 04, 2012
Last update date Nov 27, 2012
Contact name Huimin Geng
E-mail(s) huimin.geng@ucsf.edu
Organization name UCSF
Department Department of Laboratory Medicine
Street address 513 Parnassus Ave., MSB S-1480
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL15088
Series (2)
GSE34861 Integrative Epigenomic Analysis Identifies Biomarkers and Therapeutic Targets in Adult B-Acute Lymphoblastic Leukemia [mRNA profiling]
GSE34941 Integrative Epigenomic Analysis Identifies Biomarkers and Therapeutic Targets in Adult B-Acute Lymphoblastic Leukemia

Data table header descriptions
ID_REF
VALUE log2 transformed intensity values

Data table
ID_REF VALUE
HSAP0406S00000001 13.59819984
HSAP0406S00000002 13.93939972
HSAP0406S00000003 12.7475996
HSAP0406S00000004 14.0309
HSAP0406S00000005 11.53639984
HSAP0406S00000006 9.895700455
HSAP0406S00000007 8.737400055
HSAP0406S00000008 8.231200218
HSAP0406S00000009 5.447899818
HSAP0406S00000010 9.950900078
HSAP0406S00000011 7.101399899
HSAP0406S00000012 11.00220013
HSAP0406S00000013 7.710999966
HSAP0406S00000014 7.206200123
HSAP0406S00000015 7.612299919
HSAP0406S00000016 11.14560032
HSAP0406S00000017 6.515699863
HSAP0406S00000018 9.901800156
HSAP0406S00000019 8.856200218
HSAP0406S00000020 5.813099861

Total number of rows: 36846

Table truncated, full table size 1075 Kbytes.




Supplementary file Size Download File type/resource
GSM856364_27240602_532.pair.gz 5.9 Mb (ftp)(http) PAIR
Processed data included within Sample table

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