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Sample GSM856368 Query DataSets for GSM856368
Status Public on Nov 27, 2012
Title 347443
Sample type RNA
 
Source name ALL, total RNA
Organism Homo sapiens
Characteristics pathology: ALL
cytogenetics: Neg
immunophenotype: Pre-B-ALL
site (pb: peripheral blood; BM: bone marrow): BM
age: 52
Sex: M
white blood count (wbc, 10^9/l):  33.3
%blasts: 80%
imatinib: neg
overall_survival(days):  486
code_os (dead_1):  1
hyperdiploid: neg
cd25(pos >=5%, neg <5%): 0
Extracted molecule total RNA
Extraction protocol Total RNA extracted with Qiagen's RNeasy Plus Mini kit from Qiagen (Valencia, CA), per manufacturer's instructions.
Label Cy5/635
Label protocol Random priming with 7-mers pre-labeled with either Cy3 or Cy5 according to manufacturer's instructions using the NimbleGen Dual-Color DNA Labeling Kit (cat # 06370381001)
 
Hybridization protocol See Roche NimbleGen website for the detailed manufacturers protocol.
Scan protocol Scanning was performed using NimbleGen MS 200 scanner
Description 13418
Data processing RMA normalization using the RMA algorithm in NimbleScan 2.5 software (Roche NimbleGen, Inc).
 
Submission date Jan 04, 2012
Last update date Nov 27, 2012
Contact name Huimin Geng
E-mail(s) huimin.geng@ucsf.edu
Organization name UCSF
Department Department of Laboratory Medicine
Street address 513 Parnassus Ave., MSB S-1480
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL15088
Series (2)
GSE34861 Integrative Epigenomic Analysis Identifies Biomarkers and Therapeutic Targets in Adult B-Acute Lymphoblastic Leukemia [mRNA profiling]
GSE34941 Integrative Epigenomic Analysis Identifies Biomarkers and Therapeutic Targets in Adult B-Acute Lymphoblastic Leukemia

Data table header descriptions
ID_REF
VALUE log2 transformed intensity values

Data table
ID_REF VALUE
HSAP0406S00000001 14.18360043
HSAP0406S00000002 14.09119987
HSAP0406S00000003 12.46030045
HSAP0406S00000004 14.17280006
HSAP0406S00000005 10.21090031
HSAP0406S00000006 9.440400124
HSAP0406S00000007 9.93599987
HSAP0406S00000008 8.483400345
HSAP0406S00000009 6.135099888
HSAP0406S00000010 9.301199913
HSAP0406S00000011 7.555699825
HSAP0406S00000012 11.74279976
HSAP0406S00000013 8.336099625
HSAP0406S00000014 7.611599922
HSAP0406S00000015 8.137499809
HSAP0406S00000016 10.99020004
HSAP0406S00000017 6.469299793
HSAP0406S00000018 8.936400414
HSAP0406S00000019 9.119400024
HSAP0406S00000020 6.59800005

Total number of rows: 36846

Table truncated, full table size 1075 Kbytes.




Supplementary file Size Download File type/resource
GSM856368_347443_GE_635.pair.gz 6.1 Mb (ftp)(http) PAIR
Processed data included within Sample table

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