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Sample GSM856442 Query DataSets for GSM856442
Status Public on Nov 27, 2012
Title 27230402
Sample type RNA
 
Source name ALL, total RNA
Organism Homo sapiens
Characteristics pathology: ALL
cytogenetics: BCR/ABL
immunophenotype: Early-Pre-B
site (pb: peripheral blood; BM: bone marrow): PB
age: 59
Sex: F
white blood count (wbc, 10^9/l):  21
%blasts: 90%
imatinib: Pos
overall_survival(days):  353
code_os (dead_1):  1
hyperdiploid: pos
cd25(pos >=5%, neg <5%): 11
Extracted molecule total RNA
Extraction protocol Total RNA extracted with Qiagen's RNeasy Plus Mini kit from Qiagen (Valencia, CA), per manufacturer's instructions.
Label Cy3/532
Label protocol Random priming with 7-mers pre-labeled with either Cy3 or Cy5 according to manufacturer's instructions using the NimbleGen Dual-Color DNA Labeling Kit (cat # 06370381001)
 
Hybridization protocol See Roche NimbleGen website for the detailed manufacturers protocol.
Scan protocol Scanning was performed using NimbleGen MS 200 scanner
Description 17433
Data processing RMA normalization using the RMA algorithm in NimbleScan 2.5 software (Roche NimbleGen, Inc).
 
Submission date Jan 04, 2012
Last update date Nov 27, 2012
Contact name Huimin Geng
E-mail(s) huimin.geng@ucsf.edu
Organization name UCSF
Department Department of Laboratory Medicine
Street address 513 Parnassus Ave., MSB S-1480
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL15088
Series (2)
GSE34861 Integrative Epigenomic Analysis Identifies Biomarkers and Therapeutic Targets in Adult B-Acute Lymphoblastic Leukemia [mRNA profiling]
GSE34941 Integrative Epigenomic Analysis Identifies Biomarkers and Therapeutic Targets in Adult B-Acute Lymphoblastic Leukemia

Data table header descriptions
ID_REF
VALUE log2 transformed intensity values

Data table
ID_REF VALUE
HSAP0406S00000001 14.11900043
HSAP0406S00000002 13.6008997
HSAP0406S00000003 12.12919998
HSAP0406S00000004 13.5916996
HSAP0406S00000005 11.77540016
HSAP0406S00000006 9.158399582
HSAP0406S00000007 8.169300079
HSAP0406S00000008 6.625
HSAP0406S00000009 4.761199951
HSAP0406S00000010 8.958000183
HSAP0406S00000011 7.579400063
HSAP0406S00000012 11.22970009
HSAP0406S00000013 5.599400043
HSAP0406S00000014 7.827199936
HSAP0406S00000015 5.664899826
HSAP0406S00000016 10.86950016
HSAP0406S00000017 6.077499866
HSAP0406S00000018 8.579199791
HSAP0406S00000019 9.532999992
HSAP0406S00000020 5.752299786

Total number of rows: 36846

Table truncated, full table size 1075 Kbytes.




Supplementary file Size Download File type/resource
GSM856442_27230402_532.pair.gz 5.8 Mb (ftp)(http) PAIR
Processed data included within Sample table

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