|
| Status |
Public on Jun 20, 2013 |
| Title |
input CTCF BxC |
| Sample type |
SRA |
| |
|
| Source name |
whole brain
|
| Organism |
Mus musculus |
| Characteristics |
tissue: brain
strain: C57BL/6xCAST
genotype: wild type
age: P21
chip antibody: IgG
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Illumina ChIP-seq library prep kit (inputs) and NEBNext Chip-seq library prep kit (CTCF and Rad21)
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer IIx |
| |
|
| Data processing |
Alignments: reads were aligned to mm9 using novoalign. Details about aligner version and parameters used are stored in the headers of the BAM files. The stated values for mean insert size and standard deviation are derived from the paired-end alignments using Picard.
Genome Build:
iCTCF_BxC_dupmark.bam: mm9
|
| |
|
| Submission date |
Jan 17, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Rebecca J Oakey |
| Organization name |
King's College London
|
| Department |
Medical and Molecular Genetics
|
| Street address |
Great Maze Pond
|
| City |
London |
| ZIP/Postal code |
SE1 9RT |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL11002 |
| Series (1) |
| GSE35140 |
Genome-wide identification of CTCF and Cohesin binding sites in neonatal mouse brain |
|
| Relations |
| SRA |
SRX116254 |
| BioSample |
SAMN00773658 |
