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Sample GSM897069 Query DataSets for GSM897069
Status Public on Mar 16, 2012
Title CSHL_RnaSeq_HeLa-S3_cytosol_TAP-Only_shortTotal
Sample type SRA
 
Source name HeLa-S3
Organism Homo sapiens
Characteristics datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
rnaextract: shortTotal
rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation
biorep: 011C,012C,011C,012C
labexpid: LID21145,LID21148,LID21145,LID21148
labversion: iIDR
readtype: 1x36
readtype description: Single 36 nt reads
replicate: 1,2
localization: cytosol
localization description: The fluid between the cells outer membrane and the nucleus
protocol: TAP-Only
protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.
rnaextract: shortTotal
rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation
biorep: 011C
labexpid: LID21145
readtype: 1x36
readtype description: Single 36 nt reads
replicate: 1
Biomaterial provider ATCC
Growth protocol HeLa-S3_protocol.pdf
Extracted molecule cytoplasmic RNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCshlShortRnaSeq
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer IIx
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCshlShortRnaSeq
 
Submission date Mar 16, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL10999
Series (1)
GSE24565 Small RNA-seq from ENCODE/Cold Spring Harbor Lab
Relations
SRA SRX130220
BioSample SAMN00829006
Named Annotation GSM897069_hg19_wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapMinusRawRep1.bigWig
Named Annotation GSM897069_hg19_wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapMinusRawRep2.bigWig
Named Annotation GSM897069_hg19_wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapPlusRawRep1.bigWig
Named Annotation GSM897069_hg19_wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapPlusRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM897069_hg19_wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapContigs.bedRnaElements.gz 751.1 Kb (ftp)(http) BEDRNAELEMENTS
GSM897069_hg19_wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapExonsGencV7.gtf.gz 2.2 Mb (ftp)(http) GTF
GSM897069_hg19_wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapMinusRawRep1.bigWig 5.4 Mb (ftp)(http) BIGWIG
GSM897069_hg19_wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapMinusRawRep2.bigWig 7.0 Mb (ftp)(http) BIGWIG
GSM897069_hg19_wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapPlusRawRep1.bigWig 5.3 Mb (ftp)(http) BIGWIG
GSM897069_hg19_wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapPlusRawRep2.bigWig 7.0 Mb (ftp)(http) BIGWIG
GSM897069_hg19_wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapProtocolRep1.pdf.gz 313.6 Kb (ftp)(http) PDF
GSM897069_hg19_wgEncodeCshlShortRnaSeqHelas3CytosolShorttotalTapProtocolRep2.pdf.gz 314.5 Kb (ftp)(http) PDF
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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