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Sample GSM9103 Query DataSets for GSM9103
Status Public on Aug 14, 2003
Title SAGE_Hiroshima_GC_P208T
Sample type SAGE
Anchor NlaIII
Tag Count 11582
Tag Length 10
 
Source name primary gastric cancer tissue
Organism Homo sapiens
Extracted molecule total RNA
 
Description Tissue Description: 60 yrs male. Primary gastric adenocarcinoma, T4N3M0, stage IV (TNM classification of malignant tumors, 5th ed. New York: Wiley-Liss, Inc, 59-62.), poorly differentiated (diffuse-adherent type), obtained by surgery. Library constructed in the laboratory of Wataru Yasui, M. D., Ph. D. and Naohide Oue, M. D., Ph. D. (Department of Molecular Pathology, Hiroshima University Graduate School of Biomedical Sciences, Hiroshima, Japan).
Sex: male
Organ: stomach
Lab host: DH10B
Vector: pZErO-1
Vector type: plasmid
R. Site 1: Sph1
R. Site 2: Sph1
Library treatment: non-normalized
Tissue supplier: Kazuhiro Yoshida, M.D., Ph.D
Sample type: Bulk
Producer: Department of Molecular Pathology
Sequences generated to date: 2701
Keywords = stomach, advanced gastric cancer, lymph node metastasis, non-normalized, SAGE library method, bulk
 
Submission date Aug 14, 2003
Last update date May 28, 2005
Contact name Wataru Yasui
E-mail(s) wyasui@hiroshima-u.ac.jp
Phone +81-82-257-5145
Fax +81-82-257-5149
Organization name Hiroshima University Graduate School of Biomedical Sciences
Department Molecular Pathology
Street address
City Hiroshima
ZIP/Postal code 734-8551
Country Japan
 
Platform ID GPL4
Series (1)
GSE545 SAGE Hiroshima gastric cancer tissue

Data table header descriptions
TAG Ten base SAGE tag
COUNT Absolute tag count
TPM Tags per million

Data table
TAG COUNT TPM
CTAAGACTTC 102 8806.769125
ATAATTCTTT 101 8720.428251
AAAACATTCT 96 8288.723882
CAAGCATCCC 82 7079.951649
ATTCTCCAGT 79 6820.929028
CCCATCGTCC 75 6475.565533
CCCGTCCGGA 61 5266.7933
TTGGTCCTCT 61 5266.7933
CGCCGCCGGC 60 5180.452426
CACCTAATTG 51 4403.384562
GTGAAACCCC 51 4403.384562
TCCCTATTAA 51 4403.384562
GCCAGGTTAC 50 4317.043688
CCTGTAATCC 49 4230.702815
TAAAAAAAAA 48 4144.361941
TGCACGTTTT 47 4058.021067
CGCTGGTTCC 42 3626.316698
GCTTTCTCAC 42 3626.316698
CAATAAATGT 41 3539.975825
GTCATAGCTG 41 3539.975825

Total number of rows: 6135

Table truncated, full table size 149 Kbytes.




Supplementary data files not provided

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