|
Status |
Public on Apr 11, 2012 |
Title |
Stanford_ChipSeq_MEL_GATA-1_IgG-rat |
Sample type |
SRA |
|
|
Source name |
MEL
|
Organism |
Mus musculus |
Characteristics |
lab: Stanford-m lab description: Snyder - Stanford University datatype: ChipSeq datatype description: Chromatin IP Sequencing cell: MEL cell organism: mouse cell description: Leukemia (K562 analog) cell sex: M antibody: GATA-1 antibody antibodydescription: Anti-GATA-1 rabbit polyclonal antibody was generated by using a purified GST fusion to amino acids 1-89 of mouse GATA-1. Antibody Target: GATA1 antibody targetdescription: GATA-1 is a transcriptional activator which probably serves as a general switch factor for erythroid development. It binds to DNA sites with the consensus sequence [AT]GATA[AG} within regulatory regions of globin genes and of other genes expressed in erythroid cells. antibody vendorname: Donated by Dr. E.H. Bresnick, UW Madison antibody vendorid: GATA-1 treatment: None treatment description: No special treatment or protocol applies control: IgG-rat control description: Input signal from Normal Rat IgG ChIP-seq age: immortalized age description: Immortal cells control: IgG-rat control description: Input signal from Normal Rat IgG ChIP-seq controlid: MEL/None/Input/IgG-rat replicate: 1 strain: Unknown strain description: Unknown strain origin
|
Biomaterial provider |
Weissman lab
|
Treatment protocol |
None
|
Extracted molecule |
genomic DNA |
Extraction protocol |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeSydhTfbs
|
|
|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer II |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeSydhTfbs
|
|
|
Submission date |
Apr 11, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL9250 |
Series (3) |
GSE36030 |
Transcription Factor Binding Sites by ChIP-seq from ENCODE/Stanford/Yale |
GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
|
Relations |
SRA |
SRX140370 |
BioSample |
SAMN00854830 |
Named Annotation |
GSM912907_mm9_wgEncodeSydhTfbsMelGata1IggratSig.bigWig |