|
| Status |
Public on Apr 20, 2012 |
| Title |
Stanford_Nucleosome_GM12878 |
| Sample type |
SRA |
| |
|
| Source name |
GM12878
|
| Organism |
Homo sapiens |
| Characteristics |
lab: Stanford
lab description: Snyder - Stanford University
datatype: Nucleosome
datatype description: Nucleosome Position
cell: GM12878
cell organism: human
cell description: lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
cell karyotype: normal
cell lineage: mesoderm
cell sex: F
replicate: 1
|
| Biomaterial provider |
Coriell
|
| Growth protocol |
GM12878_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhNsome
instrument name: AB SOLiD 3 Plus System
|
| |
|
| Library strategy |
MNase-Seq |
| Library source |
genomic |
| Library selection |
MNase |
| Instrument model |
AB SOLiD System 3.0 |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhNsome
|
| |
|
| Submission date |
Apr 20, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9442 |
| Series (1) |
| GSE35586 |
Nucleosome Position by MNase-seq from ENCODE/Stanford/BYU |
|
| Relations |
| SRA |
SRX143920 |
| BioSample |
SAMN00862335 |
| Named Annotation |
GSM920558_hg19_wgEncodeSydhNsomeGm12878Sig.bigWig |
