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GEO accession:
Sample GSM936085
Query DataSets for GSM936085
Status
Public on May 24, 2012
Title
Broad_Combined_HSMM
Sample type
SRA
Source name
HSMM
Organism
Homo sapiens
Characteristics
lab: Broad
lab description: Bernstein - Broad Institute
datatype: Combined
datatype description: Multi-assay Synthesis
cell: HSMM
cell organism: human
cell description: skeletal muscle myoblasts
cell karyotype: normal
cell lineage: mesoderm
cell sex: U
softwareversion: ChromHMM_ENCODEDynamicsPaper
Biomaterial provider
Refer to the protocol documents for differing sources
Growth protocol
HSMM_Bernstein_protocol.pdf
Extracted molecule
genomic DNA
Extraction protocol
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHmm
Library strategy
ChIP-Seq
Library source
genomic
Library selection
ChIP
Instrument model
Illumina Genome Analyzer
Data processing
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHmm
Submission date
May 23, 2012
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL9052
Series (1)
GSE38163
Chromatin State Segmentation by HMM from ENCODE/Broad
Relations
Reanalysis of
GSM733637
Reanalysis of
GSM733663
Reanalysis of
GSM733667
Reanalysis of
GSM733676
Reanalysis of
GSM733702
Reanalysis of
GSM733730
Reanalysis of
GSM733741
Reanalysis of
GSM733755
Reanalysis of
GSM733760
Reanalysis of
GSM733761
Reanalysis of
GSM733762
Reanalysis of
GSM733768
Reanalysis of
GSM733775
BioSample
SAMN02197537
Named Annotation
GSM936085_hg19_wgEncodeBroadHmmHsmmHMM.bed.gz
SRA
SRX067388
SRA
SRX067414
SRA
SRX067418
SRA
SRX067427
SRA
SRX067453
SRA
SRX067481
SRA
SRX067492
SRA
SRX067506
SRA
SRX067511
SRA
SRX067512
SRA
SRX067513
SRA
SRX067519
SRA
SRX067526
Supplementary file
Size
Download
File type/resource
GSM936085_hg19_wgEncodeBroadHmmHsmmHMM.bed.gz
5.9 Mb
(ftp)
(http)
BED
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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