NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM936088 Query DataSets for GSM936088
Status Public on May 24, 2012
Title Broad_Combined_K562
Sample type SRA
 
Source name K562
Organism Homo sapiens
Characteristics lab: Broad
lab description: Bernstein - Broad Institute
datatype: Combined
datatype description: Multi-assay Synthesis
cell: K562
cell organism: human
cell description: leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype: cancer
cell lineage: mesoderm
cell sex: F
softwareversion: ChromHMM_ENCODEDynamicsPaper
Biomaterial provider ATCC
Growth protocol K562_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHmm
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHmm
 
Submission date May 23, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE38163 Chromatin State Segmentation by HMM from ENCODE/Broad
Relations
Reanalysis of GSM733643
Reanalysis of GSM733651
Reanalysis of GSM733653
Reanalysis of GSM733656
Reanalysis of GSM733658
Reanalysis of GSM733675
Reanalysis of GSM733680
Reanalysis of GSM733692
Reanalysis of GSM733714
Reanalysis of GSM733719
Reanalysis of GSM733776
Reanalysis of GSM733777
Reanalysis of GSM733778
Reanalysis of GSM733780
Reanalysis of GSM733786
BioSample SAMN02197540
Named Annotation GSM936088_hg19_wgEncodeBroadHmmK562HMM.bed.gz
SRA SRX067394
SRA SRX067402
SRA SRX067404
SRA SRX067407
SRA SRX067409
SRA SRX067426
SRA SRX067431
SRA SRX067443
SRA SRX067465
SRA SRX067470
SRA SRX067527
SRA SRX067528
SRA SRX067529
SRA SRX067531
SRA SRX067537

Supplementary file Size Download File type/resource
GSM936088_hg19_wgEncodeBroadHmmK562HMM.bed.gz 5.8 Mb (ftp)(http) BED
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap