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Sample GSM954154 Query DataSets for GSM954154
Status Public on Jun 30, 2012
Title Duct1
Sample type RNA
 
Source name Duct1
Organism Homo sapiens
Characteristics tissue: Normal breast duct tissue
Treatment protocol 8 breast duct samples and 8 lobule samples were obtained from premenopausal patients undergoing surgical treatment for their nipple discharge at the Guangdong Women and Children Hospital.Immediately after collection, all samples were rapidly preserved in RNAlater reagent, and a portion of each tissue sample was used for pathological examination.
Extracted molecule total RNA
Extraction protocol Total RNA was prepared using Trizol reagent (Invitrogen, Gaithersburg, MD) according to the supplier’s instructions.
Label Cy3
Label protocol 100 ng of total RNA each sample was amplified and labeled using Agilent LowInput Quick Amp Labeling Kit according to the manufacturer’s protocol.
 
Hybridization protocol According to the instructions of Agilent Gene Expression Hybridization Kit
Scan protocol Scanned on an Agilent G2505C scanner.
Images were quantified using Agilent Feature Extraction Software (version 10.7.3.1).
Description US10283824_252800412039
Biological replicate 1 of 8 ducts
Data processing Agilent Feature Extraction Software (version 10.7.3.1) was used for background subtraction and LOWESS normalization.
 
Submission date Jun 29, 2012
Last update date Jun 30, 2012
Contact name wang liang
E-mail(s) wangliangkexue@163.com
Organization name BioChainBJ
Street address 7A North Yongchang Road BDA
City Beijing
ZIP/Postal code 100176
Country China
 
Platform ID GPL14550
Series (1)
GSE39021 Gene expressions in normal breast duct vs lobule

Data table header descriptions
ID_REF
VALUE Normalized signal intensity

Data table
ID_REF VALUE
A_19_P00315452 381
A_19_P00315459 311
A_19_P00315469 4
A_19_P00315473 6
A_19_P00315482 75
A_19_P00315490 5
A_19_P00315492 13
A_19_P00315493 80
A_19_P00315496 12
A_19_P00315499 46
A_19_P00315502 105
A_19_P00315504 123
A_19_P00315506 1336
A_19_P00315508 16
A_19_P00315518 14
A_19_P00315519 12
A_19_P00315523 13
A_19_P00315524 123
A_19_P00315526 124
A_19_P00315527 207

Total number of rows: 42405

Table truncated, full table size 722 Kbytes.




Supplementary file Size Download File type/resource
GSM954154_US10283824_252800412039_S01_GE1_107_Sep09_2_1.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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