|
Status |
Public on Jul 26, 2012 |
Title |
CSHL_RnaSeq_CD20+_cell_TAP-Only_shortTotal |
Sample type |
SRA |
|
|
Source name |
CD20+
|
Organism |
Homo sapiens |
Characteristics |
datatype: RnaSeq datatype description: Sequencing analysis of RNA expression rnaextract: shortTotal rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation biorep: 042WC,041WC,042WC,041WC labexpid: LID44362,LID44363,LID44362,LID44363 labversion: iIDR readtype: 1x36 readtype description: Single 36 nt reads replicate: 1,2 localization: cell localization description: Whole cell protocol: TAP-Only protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned. rnaextract: shortTotal rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation biorep: 041WC,042WC labexpid: LID44362,LID44363 labversion: iIDR readtype: 1x36 readtype description: Single 36 nt reads
|
Biomaterial provider |
Dr. Heimfeld Lab at FHCRC
|
Extracted molecule |
total RNA |
Extraction protocol |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCshlShortRnaSeq
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina Genome Analyzer IIx |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCshlShortRnaSeq
|
|
|
Submission date |
Jul 26, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL10999 |
Series (1) |
GSE24565 |
Small RNA-seq from ENCODE/Cold Spring Harbor Lab |
|
Relations |
SRA |
SRX171118 |
BioSample |
SAMN01095707 |
Named Annotation |
GSM977043_hg19_wgEncodeCshlShortRnaSeqCd20ro01778CellShorttotalTapMinusRep2.bigWig |
Named Annotation |
GSM977043_hg19_wgEncodeCshlShortRnaSeqCd20ro01778CellShorttotalTapPlusRep2.bigWig |
Named Annotation |
GSM977043_hg19_wgEncodeCshlShortRnaSeqCd20ro01794CellShorttotalTapMinusRep1.bigWig |
Named Annotation |
GSM977043_hg19_wgEncodeCshlShortRnaSeqCd20ro01794CellShorttotalTapPlusRep1.bigWig |
Supplementary file |
Size |
Download |
File type/resource |
GSM977043_hg19_wgEncodeCshlShortRnaSeqCd20CellTapContigs.bedRnaElements.gz |
587.9 Kb |
(ftp)(http) |
BEDRNAELEMENTS |
GSM977043_hg19_wgEncodeCshlShortRnaSeqCd20CellTapExonsGencV10.gtf.gz |
2.2 Mb |
(ftp)(http) |
GTF |
GSM977043_hg19_wgEncodeCshlShortRnaSeqCd20CellTapProtocolRep1.pdf.gz |
208.2 Kb |
(ftp)(http) |
PDF |
GSM977043_hg19_wgEncodeCshlShortRnaSeqCd20CellTapProtocolRep2.pdf.gz |
203.9 Kb |
(ftp)(http) |
PDF |
GSM977043_hg19_wgEncodeCshlShortRnaSeqCd20ro01778CellShorttotalTapMinusRep2.bigWig |
2.9 Mb |
(ftp)(http) |
BIGWIG |
GSM977043_hg19_wgEncodeCshlShortRnaSeqCd20ro01778CellShorttotalTapPlusRep2.bigWig |
2.9 Mb |
(ftp)(http) |
BIGWIG |
GSM977043_hg19_wgEncodeCshlShortRnaSeqCd20ro01794CellShorttotalTapMinusRep1.bigWig |
4.0 Mb |
(ftp)(http) |
BIGWIG |
GSM977043_hg19_wgEncodeCshlShortRnaSeqCd20ro01794CellShorttotalTapPlusRep1.bigWig |
3.9 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |