GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM979635
Query DataSets for GSM979635
Status
Public on Aug 01, 2012
Title
RIKEN_Cage_CD34+_Mobilized_cell_longPolyA
Sample type
SRA
Source name
CD34+_Mobilized
Organism
Homo sapiens
Characteristics
datatype: Cage
datatype description: CAGE 5' RNA Tags
rnaextract: longPolyA
rnaextract description: Poly(A)+ RNA longer than 200 nt
biorep: 043WC
labexpid: CThi10058
readtype: 1x50
readtype description: Single 50 nt reads
localization: cell
localization description: Whole cell
rnaextract: longPolyA
rnaextract description: Poly(A)+ RNA longer than 200 nt
biorep: 043WC
labexpid: CThi10058
readtype: 1x50
readtype description: Single 50 nt reads
replicate: 1
Biomaterial provider
Dr. Heimfeld Lab at FHCRC
Extracted molecule
polyA RNA
Extraction protocol
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeRikenCage
Library strategy
RNA-Seq
Library source
transcriptomic
Library selection
CAGE
Instrument model
Illumina HiSeq 2000
Data processing
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeRikenCage
Submission date
Aug 01, 2012
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL11154
Series (1)
GSE34448
RNA Subcellular CAGE Localization from ENCODE/RIKEN
Relations
SRA
SRX172612
BioSample
SAMN01096372
Named Annotation
GSM979635_hg19_wgEncodeRikenCageCd34mobilizedCellPapMinusRawRep1.bigWig
Named Annotation
GSM979635_hg19_wgEncodeRikenCageCd34mobilizedCellPapPlusRawRep1.bigWig
Supplementary file
Size
Download
File type/resource
GSM979635_hg19_wgEncodeRikenCageCd34mobilizedCellPapMinusRawRep1.bigWig
34.3 Mb
(ftp)
(http)
BIGWIG
GSM979635_hg19_wgEncodeRikenCageCd34mobilizedCellPapPlusRawRep1.bigWig
32.4 Mb
(ftp)
(http)
BIGWIG
GSM979635_hg19_wgEncodeRikenCageCd34mobilizedCellPapTssHmm.bedRnaElements.gz
1.9 Mb
(ftp)
(http)
BEDRNAELEMENTS
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|