|
Status |
Public on Aug 01, 2012 |
Title |
RIKEN_Cage_HFDPC_cell_longPolyA |
Sample type |
SRA |
|
|
Source name |
HFDPC
|
Organism |
Homo sapiens |
Characteristics |
datatype: Cage datatype description: CAGE 5' RNA Tags rnaextract: longPolyA rnaextract description: Poly(A)+ RNA longer than 200 nt biorep: 061WC,062WC,062WC,061WC labexpid: CThi10103ACA,CThi10100GAT,CThi10103ACA,CThi10100GAT readtype: 1x50 readtype description: Single 50 nt reads replicate: 1,2 cell sex: F localization: cell localization description: Whole cell rnaextract: longPolyA rnaextract description: Poly(A)+ RNA longer than 200 nt biorep: 061WC labexpid: CThi10103ACA readtype: 1x50 readtype description: Single 50 nt reads replicate: 1
|
Biomaterial provider |
PromoCell
|
Extracted molecule |
polyA RNA |
Extraction protocol |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeRikenCage
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
CAGE |
Instrument model |
Illumina HiSeq 2000 |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeRikenCage
|
|
|
Submission date |
Aug 01, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL11154 |
Series (1) |
GSE34448 |
RNA Subcellular CAGE Localization from ENCODE/RIKEN |
|
Relations |
SRA |
SRX172615 |
BioSample |
SAMN01096375 |
Named Annotation |
GSM979638_hg19_wgEncodeRikenCageHfdpcCellPapMinusRawRep1.bigWig |
Named Annotation |
GSM979638_hg19_wgEncodeRikenCageHfdpcCellPapMinusRawRep2.bigWig |
Named Annotation |
GSM979638_hg19_wgEncodeRikenCageHfdpcCellPapPlusRawRep1.bigWig |
Named Annotation |
GSM979638_hg19_wgEncodeRikenCageHfdpcCellPapPlusRawRep2.bigWig |