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Sample GSM979644 Query DataSets for GSM979644
Status Public on Aug 01, 2012
Title RIKEN_Cage_HUVEC_nucleus_longNonPolyA
Sample type SRA
 
Source name HUVEC
Organism Homo sapiens
Characteristics datatype: Cage
datatype description: CAGE 5' RNA Tags
rnaextract: longNonPolyA
rnaextract description: Poly(A)- RNA longer than 200 nt
biorep: gen0162N
labexpid: CTig10027
readtype: 1x36
readtype description: Single 36 nt reads
cell lineage: mesoderm
cell sex: U
localization: nucleus
localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA
rnaextract: longNonPolyA
rnaextract description: Poly(A)- RNA longer than 200 nt
biorep: gen0162N
labexpid: CTig10027
readtype: 1x36
readtype description: Single 36 nt reads
replicate: 1
Biomaterial provider Lonza
Growth protocol HUVEC_protocol.pdf
Extracted molecule nuclear RNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeRikenCage
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection CAGE
Instrument model Illumina Genome Analyzer IIx
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeRikenCage
 
Submission date Aug 01, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL10999
Series (1)
GSE34448 RNA Subcellular CAGE Localization from ENCODE/RIKEN
Relations
SRA SRX172621
BioSample SAMN01096381
Named Annotation GSM979644_hg19_wgEncodeRikenCageHuvecNucleusPamMinusRawRep1.bigWig
Named Annotation GSM979644_hg19_wgEncodeRikenCageHuvecNucleusPamPlusRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM979644_hg19_wgEncodeRikenCageHuvecNucleusPamMinusRawRep1.bigWig 25.9 Mb (ftp)(http) BIGWIG
GSM979644_hg19_wgEncodeRikenCageHuvecNucleusPamPlusRawRep1.bigWig 23.3 Mb (ftp)(http) BIGWIG
GSM979644_hg19_wgEncodeRikenCageHuvecNucleusPamTssHmm.bedRnaElements.gz 1.6 Mb (ftp)(http) BEDRNAELEMENTS
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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