NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM979648 Query DataSets for GSM979648
Status Public on Aug 01, 2012
Title RIKEN_Cage_SK-N-SH_cytosol_longPolyA
Sample type SRA
 
Source name SK-N-SH
Organism Homo sapiens
Characteristics datatype: Cage
datatype description: CAGE 5' RNA Tags
rnaextract: longPolyA
rnaextract description: Poly(A)+ RNA longer than 200 nt
biorep: 085C,085C,086C,086C
labexpid: CThi10044,CThi10047,CThi10044,CThi10047
readtype: 1x50
readtype description: Single 50 nt reads
replicate: 3,4
cell sex: F
localization: cytosol
localization description: The fluid between the cells outer membrane and the nucleus
rnaextract: longPolyA
rnaextract description: Poly(A)+ RNA longer than 200 nt
biorep: 085C
labexpid: CThi10044
readtype: 1x50
readtype description: Single 50 nt reads
replicate: 3
Biomaterial provider ATCC
Extracted molecule polyA RNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeRikenCage
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection CAGE
Instrument model Illumina HiSeq 2000
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeRikenCage
 
Submission date Aug 01, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL11154
Series (1)
GSE34448 RNA Subcellular CAGE Localization from ENCODE/RIKEN
Relations
SRA SRX172625
BioSample SAMN01096385
Named Annotation GSM979648_hg19_wgEncodeRikenCageSknshCytosolPapMinusRawRep3.bigWig
Named Annotation GSM979648_hg19_wgEncodeRikenCageSknshCytosolPapMinusRawRep4.bigWig
Named Annotation GSM979648_hg19_wgEncodeRikenCageSknshCytosolPapPlusRawRep3.bigWig
Named Annotation GSM979648_hg19_wgEncodeRikenCageSknshCytosolPapPlusRawRep4.bigWig

Supplementary file Size Download File type/resource
GSM979648_hg19_wgEncodeRikenCageSknshCytosolPapMinusRawRep3.bigWig 25.3 Mb (ftp)(http) BIGWIG
GSM979648_hg19_wgEncodeRikenCageSknshCytosolPapMinusRawRep4.bigWig 25.3 Mb (ftp)(http) BIGWIG
GSM979648_hg19_wgEncodeRikenCageSknshCytosolPapPlusRawRep3.bigWig 24.7 Mb (ftp)(http) BIGWIG
GSM979648_hg19_wgEncodeRikenCageSknshCytosolPapPlusRawRep4.bigWig 24.6 Mb (ftp)(http) BIGWIG
GSM979648_hg19_wgEncodeRikenCageSknshCytosolPapTssHmm.bedRnaElements.gz 4.6 Mb (ftp)(http) BEDRNAELEMENTS
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap