|
Status |
Public on Aug 01, 2012 |
Title |
RIKEN_Cage_SK-N-SH_cytosol_longPolyA |
Sample type |
SRA |
|
|
Source name |
SK-N-SH
|
Organism |
Homo sapiens |
Characteristics |
datatype: Cage datatype description: CAGE 5' RNA Tags rnaextract: longPolyA rnaextract description: Poly(A)+ RNA longer than 200 nt biorep: 085C,085C,086C,086C labexpid: CThi10044,CThi10047,CThi10044,CThi10047 readtype: 1x50 readtype description: Single 50 nt reads replicate: 3,4 cell sex: F localization: cytosol localization description: The fluid between the cells outer membrane and the nucleus rnaextract: longPolyA rnaextract description: Poly(A)+ RNA longer than 200 nt biorep: 085C labexpid: CThi10044 readtype: 1x50 readtype description: Single 50 nt reads replicate: 3
|
Biomaterial provider |
ATCC
|
Extracted molecule |
polyA RNA |
Extraction protocol |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeRikenCage
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
CAGE |
Instrument model |
Illumina HiSeq 2000 |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeRikenCage
|
|
|
Submission date |
Aug 01, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL11154 |
Series (1) |
GSE34448 |
RNA Subcellular CAGE Localization from ENCODE/RIKEN |
|
Relations |
SRA |
SRX172625 |
BioSample |
SAMN01096385 |
Named Annotation |
GSM979648_hg19_wgEncodeRikenCageSknshCytosolPapMinusRawRep3.bigWig |
Named Annotation |
GSM979648_hg19_wgEncodeRikenCageSknshCytosolPapMinusRawRep4.bigWig |
Named Annotation |
GSM979648_hg19_wgEncodeRikenCageSknshCytosolPapPlusRawRep3.bigWig |
Named Annotation |
GSM979648_hg19_wgEncodeRikenCageSknshCytosolPapPlusRawRep4.bigWig |