|
| Status |
Public on Aug 01, 2012 |
| Title |
RIKEN_Cage_MCF-7_nucleus_longPolyA |
| Sample type |
SRA |
| |
|
| Source name |
MCF-7
|
| Organism |
Homo sapiens |
| Characteristics |
datatype: Cage
datatype description: CAGE 5' RNA Tags
rnaextract: longPolyA
rnaextract description: Poly(A)+ RNA longer than 200 nt
biorep: 089N,090N,089N,090N
labexpid: CThi10052,CThi10054,CThi10054,CThi10052
readtype: 1x50
readtype description: Single 50 nt reads
replicate: 3,4
cell sex: F
localization: nucleus
localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA
rnaextract: longPolyA
rnaextract description: Poly(A)+ RNA longer than 200 nt
biorep: 089N
labexpid: CThi10052
readtype: 1x50
readtype description: Single 50 nt reads
replicate: 3
|
| Biomaterial provider |
ATCC
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeRikenCage
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
CAGE |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeRikenCage
|
| |
|
| Submission date |
Aug 01, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL11154 |
| Series (1) |
| GSE34448 |
RNA Subcellular CAGE Localization from ENCODE/RIKEN |
|
| Relations |
| SRA |
SRX172631 |
| BioSample |
SAMN01096391 |
| Named Annotation |
GSM979654_hg19_wgEncodeRikenCageMcf7NucleusPapMinusRawRep3.bigWig |
| Named Annotation |
GSM979654_hg19_wgEncodeRikenCageMcf7NucleusPapMinusRawRep4.bigWig |
| Named Annotation |
GSM979654_hg19_wgEncodeRikenCageMcf7NucleusPapPlusRawRep3.bigWig |
| Named Annotation |
GSM979654_hg19_wgEncodeRikenCageMcf7NucleusPapPlusRawRep4.bigWig |
