|
| Status |
Public on Aug 07, 2012 |
| Title |
CSHL_RnaSeq_CD20+_cell_longNonPolyA (superseded by GSE90269) |
| Sample type |
SRA |
| |
|
| Source name |
CD20+
|
| Organism |
Homo sapiens |
| Characteristics |
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
rnaextract: longNonPolyA
rnaextract description: Poly(A)- RNA longer than 200 nt
biorep: 042WC,041WC,042WC,041WC,042WC,041WC
labexpid: LID44659,LID44659,LID44660,LID44660,LID44660,LID44659
labversion: iIDR
readtype: 2x76D
readtype description: Paired 76 nt directed reads
replicate: 1,2
spikeinpool: Nist14
localization description: Whole cell
rnaextract: longNonPolyA
rnaextract description: Poly(A)- RNA longer than 200 nt
biorep: 041WC,042WC
labexpid: LID44659,LID44660
labversion: iIDR
readtype: 2x76D
readtype description: Paired 76 nt directed reads
spikeinpool: Nist14
|
| Biomaterial provider |
Dr. Heimfeld Lab at FHCRC
|
| Extracted molecule |
total RNA |
| Extraction protocol |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCshlLongRnaSeq
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina Genome Analyzer IIx |
| |
|
| Description |
****************************
GSM981254 record metadata submitted on Aug 06 2012 may be obsolete, up to date experimental metadata was resubmitted by ENCODE DCC and is available at GSE90269
****************************
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCshlLongRnaSeq
|
| |
|
| Submission date |
Aug 06, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL10999 |
| Series (2) |
| GSE26284 |
ENCODE Cold Spring Harbor Labs Long RNA-seq |
| GSE30567 |
ENCODE Cold Spring Harbor Labs Long RNA-seq (hg19) |
|
| Relations |
| Superseded by |
GSE90269 |
| SRA |
SRX174323 |
| BioSample |
SAMN01103824 |
| Named Annotation |
GSM981254_hg19_wgEncodeCshlLongRnaSeqCd20CellPamMinusRep1.bigWig |
| Named Annotation |
GSM981254_hg19_wgEncodeCshlLongRnaSeqCd20CellPamMinusRep2.bigWig |
| Named Annotation |
GSM981254_hg19_wgEncodeCshlLongRnaSeqCd20CellPamPlusRep1.bigWig |
| Named Annotation |
GSM981254_hg19_wgEncodeCshlLongRnaSeqCd20CellPamPlusRep2.bigWig |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM981254_hg19_wgEncodeCshlLongRnaSeqCd20CellPamContigs.bedRnaElements.gz |
15.5 Mb |
(ftp)(http) |
BEDRNAELEMENTS |
| GSM981254_hg19_wgEncodeCshlLongRnaSeqCd20CellPamExonsDeNovo.gff.gz |
11.7 Mb |
(ftp)(http) |
GFF |
| GSM981254_hg19_wgEncodeCshlLongRnaSeqCd20CellPamExonsGencV10.gtf.gz |
19.4 Mb |
(ftp)(http) |
GTF |
| GSM981254_hg19_wgEncodeCshlLongRnaSeqCd20CellPamGeneDeNovo.gff.gz |
5.0 Mb |
(ftp)(http) |
GFF |
| GSM981254_hg19_wgEncodeCshlLongRnaSeqCd20CellPamGeneGencV10.gtf.gz |
1.8 Mb |
(ftp)(http) |
GTF |
| GSM981254_hg19_wgEncodeCshlLongRnaSeqCd20CellPamJunctions.bedRnaElements.gz |
7.2 Mb |
(ftp)(http) |
BEDRNAELEMENTS |
| GSM981254_hg19_wgEncodeCshlLongRnaSeqCd20CellPamMinusRep1.bigWig |
220.0 Mb |
(ftp)(http) |
BIGWIG |
| GSM981254_hg19_wgEncodeCshlLongRnaSeqCd20CellPamMinusRep2.bigWig |
85.3 Mb |
(ftp)(http) |
BIGWIG |
| GSM981254_hg19_wgEncodeCshlLongRnaSeqCd20CellPamPlusRep1.bigWig |
226.5 Mb |
(ftp)(http) |
BIGWIG |
| GSM981254_hg19_wgEncodeCshlLongRnaSeqCd20CellPamPlusRep2.bigWig |
88.0 Mb |
(ftp)(http) |
BIGWIG |
| GSM981254_hg19_wgEncodeCshlLongRnaSeqCd20CellPamSpikeinsRep1.spikeins.bam |
254.6 Mb |
(ftp)(http) |
BAM |
| GSM981254_hg19_wgEncodeCshlLongRnaSeqCd20CellPamSpikeinsRep2.spikeins.bam |
462.4 Mb |
(ftp)(http) |
BAM |
| GSM981254_hg19_wgEncodeCshlLongRnaSeqCd20CellPamTranscriptDeNovo.gtf.gz |
5.5 Mb |
(ftp)(http) |
GTF |
| GSM981254_hg19_wgEncodeCshlLongRnaSeqCd20CellPamTranscriptGencV10.gtf.gz |
4.8 Mb |
(ftp)(http) |
GTF |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
