|
| Status |
Public on Aug 07, 2012 |
| Title |
Affymetrix HG-U133 arrays of NIH Epigenomics Roadmap Cell Types; Primary rectal smooth muscle tissue; GBM_hsKM_REMC4 |
| Sample type |
RNA |
| |
|
| Source name |
Primary rectal smooth muscle tissue; GBM_hsKM_REMC4
|
| Organism |
Homo sapiens |
| Characteristics |
collection_method: surgery
donor_health_status: normal smooth muscle
disease: none
tissue_type: smooth muscle
passage_if_expanded: NA
donor_ethnicity: white
donor_sex: Female
biomaterial_type: Primary Tissue
tissue_depot: rectum
donor_id: 30
biomaterial_provider: MGH Pathology
donor_age: 50
|
| Treatment protocol |
untreated primary tissue
|
| Growth protocol |
Uncultured primary tissue
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Cells were lysed and RNA extracted using Qiagen Rneasy kit
|
| Label |
biotin
|
| Label protocol |
As recommended by Affymetrix
|
| |
|
| Hybridization protocol |
As recommended by Affymetrix
|
| Scan protocol |
As recommended by Affymetrix
|
| Description |
sample_term_id: NTR_0001404
assay_term_id: OBI_0001463
nucleic_acid_term_id: SO_0000356
Primary tissue from rectal smooth muscle was isolated from surgical samples; total RNA was isolated and subject to Affymetrix profiling
EDACC Genboree Experiment Page:
http://genboree.org/java-bin/project.jsp?projectName=XML%20Submissions%2FBroad%2FEXPERIMENT%2FEDACC.7567
sample alias: 39
|
| Data processing |
Processed data were not provided for this record
|
| |
|
| Submission date |
Aug 06, 2012 |
| Last update date |
Jan 29, 2015 |
| Contact name |
BROAD INSTITUTE |
| E-mail(s) |
rharris1@bcm.tmc.edu
|
| Organization name |
Broad Institute
|
| Street address |
-
|
| City |
Cambridge |
| State/province |
MA |
| ZIP/Postal code |
02142 |
| Country |
USA |
| |
|
| Platform ID |
GPL570 |
| Series (1) |
| GSE17312 |
BI Human Reference Epigenome Mapping Project |
|
| Relations |
| BioSample |
SAMN00119935 |
