|
Status |
Public on Aug 07, 2012 |
Title |
Affymetrix HG-U133 arrays of NIH Epigenomics Roadmap Cell Types; Primary colonic mucosal tissue; RNAPrp 27_632058 |
Sample type |
RNA |
|
|
Source name |
Primary colonic mucosal tissue; RNAPrp 27_632058
|
Organism |
Homo sapiens |
Characteristics |
collection_method: surgery donor_health_status: "normal mucosa, adeno. CA of Cecum" disease: none tissue_type: mucosa passage_if_expanded: NA donor_ethnicity: white donor_sex: Female biomaterial_type: Primary Tissue tissue_depot: colon donor_id: 32 biomaterial_provider: MGH Pathology donor_age: 73
|
Treatment protocol |
untreated primary tissue
|
Growth protocol |
Uncultured primary tissue
|
Extracted molecule |
total RNA |
Extraction protocol |
Cells were lysed and RNA extracted using Qiagen Rneasy kit
|
Label |
biotin
|
Label protocol |
As recommended by Affymetrix
|
|
|
Hybridization protocol |
As recommended by Affymetrix
|
Scan protocol |
As recommended by Affymetrix
|
Description |
sample_term_id: UBERON_0000317 assay_term_id: OBI_0001463 nucleic_acid_term_id: SO_0000356 Primary tissue from colonic mucosa was isolated from surgical samples; total RNA was isolated and subject to Affymetrix profiling EDACC Genboree Experiment Page: http://genboree.org/java-bin/project.jsp?projectName=XML%20Submissions%2FBroad%2FEXPERIMENT%2FEDACC.13329 sample alias: 41 EDACC Genboree Sample Page: http://genboree.org/java-bin/project.jsp?projectName=XML%20Submissions%2FBroad%2FSAMPLE%2FEDACC.3354
|
Data processing |
Processed data were not provided for this record
|
|
|
Submission date |
Aug 06, 2012 |
Last update date |
Jan 29, 2015 |
Contact name |
BROAD INSTITUTE |
E-mail(s) |
rharris1@bcm.tmc.edu
|
Organization name |
Broad Institute
|
Street address |
-
|
City |
Cambridge |
State/province |
MA |
ZIP/Postal code |
02142 |
Country |
USA |
|
|
Platform ID |
GPL570 |
Series (1) |
GSE17312 |
BI Human Reference Epigenome Mapping Project |
|
Relations |
BioSample |
SAMN00119942 |