|
Status |
Public on Aug 17, 2012 |
Title |
blood from human pancreatic cancer patient 3 processed by IgG CTC-Chip |
Sample type |
SRA |
|
|
Source name |
pancreatic cancer patient, blood, IgG CTC-Chip
|
Organism |
Homo sapiens |
Characteristics |
donor: pancreatic cancer patient 3 disease state: pancreatic cancer tissue: blood ChIP: IgG CTC-Chip cell type: circulating tumor cell (CTC)
|
Extracted molecule |
total RNA |
Extraction protocol |
Qiagen RNeasy MinElute kit followed by Helicos single-molecule sequencing. See Pubmed IDs 18388294, 20133332.
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Helicos HeliScope |
|
|
Description |
PDAC_3.IgG mRNA Helicos Digital Gene Expression pipeline. See Pubmed ID 19581875.
|
Data processing |
Helicos Digital Gene Expression pipeline. See Pubmed ID 19581875. Genome_build: hg18 Supplementary_files_format_and_content: GSE40174_human_processed_data.txt: Tab-delimited text file of aligned read counts. Row names are UCSC known Gene transcript IDs or gene symbols, and column names are sample IDs. The 'GSE40174_human_processed_data.txt' file is linked to the Series record as a supplementary file.
|
|
|
Submission date |
Aug 16, 2012 |
Last update date |
May 15, 2019 |
Contact name |
Ben S. Wittner |
E-mail(s) |
wittner.ben@mgh.harvard.edu
|
Organization name |
Massachusetts General Hospital
|
Department |
Center for Cancer Research
|
Lab |
Lawrence
|
Street address |
149 13th Street
|
City |
Boston |
State/province |
MA |
ZIP/Postal code |
02129 |
Country |
USA |
|
|
Platform ID |
GPL14761 |
Series (2) |
GSE40174 |
RNA sequencing of circulating tumour cells implicates WNT signaling in pancreatic cancer metastasis (human data) |
GSE40176 |
RNA sequencing of circulating tumour cells implicates WNT signaling in pancreatic cancer metastasis |
|
Relations |
SRA |
SRX178485 |
BioSample |
SAMN01120354 |