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Status |
Public on Oct 30, 2012 |
Title |
rAC-VECs 1 |
Sample type |
SRA |
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Source name |
rAC-VEC
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Organism |
Homo sapiens |
Characteristics |
cell type: rAC-VEC
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Extracted molecule |
total RNA |
Extraction protocol |
Illumina TruSeq, PE 51x2
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Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2000 |
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Data processing |
Illumina Casava1.8 software used for basecalling. Sequence reads were aligned to hg18 using TopHat with default parameters FPKM were obtained using CuffLinks with upper-quartile and GC normalization Genome_build: hg18 Supplementary_files_format_and_content: tab-delimited FPKM values for each Refseq transcript
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Submission date |
Aug 22, 2012 |
Last update date |
May 15, 2019 |
Contact name |
Olivier Elemento |
E-mail(s) |
ole2001@med.cornell.edu
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Organization name |
WEILL MEDICAL COLLEGE OF CORNELL UNIV
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Street address |
1305 York Avenue
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City |
New York |
State/province |
NY |
ZIP/Postal code |
10021 |
Country |
USA |
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Platform ID |
GPL11154 |
Series (1) |
GSE40291 |
Efficient direct reprogramming of c-Kit− mature amniotic cells into endothelial cells by ETS factors and TGFβ suppression |
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Relations |
SRA |
SRX183776 |
BioSample |
SAMN01162361 |
Supplementary file |
Size |
Download |
File type/resource |
GSM990765_Sample_1_rAC-VECs1_RefSeq_FPKM.txt.gz |
173.4 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
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