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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Oct 30, 2012 |
| Title |
rAC-VEC clone 4 |
| Sample type |
SRA |
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| Source name |
rAC-VEC
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| Organism |
Homo sapiens |
| Characteristics |
cell type: rAC-VEC
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| Extracted molecule |
total RNA |
| Extraction protocol |
Illumina TruSeq, PE 51x2
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
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| Data processing |
Illumina Casava1.8 software used for basecalling.
Sequence reads were aligned to hg18 using TopHat with default parameters
FPKM were obtained using CuffLinks with upper-quartile and GC normalization
Genome_build: hg18
Supplementary_files_format_and_content: tab-delimited FPKM values for each Refseq transcript
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| Submission date |
Aug 22, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Olivier Elemento |
| E-mail(s) |
ole2001@med.cornell.edu
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| Organization name |
WEILL MEDICAL COLLEGE OF CORNELL UNIV
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| Street address |
1305 York Avenue
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| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10021 |
| Country |
USA |
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| Platform ID |
GPL11154 |
| Series (1) |
| GSE40291 |
Efficient direct reprogramming of c-Kit− mature amniotic cells into endothelial cells by ETS factors and TGFβ suppression |
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| Relations |
| SRA |
SRX183779 |
| BioSample |
SAMN01162364 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM990768_Sample_4_rAC-VECclone4_RefSeq_FPKM.txt.gz |
171.7 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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