NIH Roadmap Epigenomics Project Data Listings

This page summarizes Roadmap Epigenomics project data that are available through the GEO repository. Additional data will be added as it becomes available.

For data usage terms and conditions, please refer to
Epigenomics Data Access Policies

Samples Studies Matrix
Bisulfite-Seq
MeDIP-Seq
MRE-Seq
RRBS
mRNA-Seq
smRNA-Seq
Exon array
Expression array
DNase hypersensitivity
Digital genomic footprinting
ChIP-Seq input
H3K4me1
H3K4me2
H3K4me3
H3K9me3
H3K27me3
H3K36me3
H3K9ac
H4K20me1
H3K79me1
H3K79me2
H3K4ac
H4K5ac
H4K8ac
H3K14ac
H3K18ac
H3K23ac
H3K27ac
H3K56ac
H4K91ac
H2AK5ac
H2BK5ac
H2BK12ac
H2BK15ac
H2BK20ac
H2BK120ac
H3K23me2
H3K9me1
H2A.Z
H3T11ph
H2AK9ac
H4K12ac
Whole genome sequencing
Genotyping array
TAB-Seq
CD14 primary cells
1
1
3
3
1
1
1
1
1
1
1
1
2
CD15 primary cells
1
1
1
2
1
1
1
CD19 primary cells
1
1
1
1
3
1
3
2
3
4
4
3
1
CD20 primary cells
1
CD3 cord blood primary cells
2
1
2
1
CD3 mobilized primary cells
1
2
CD3 primary cells
1
1
1
2
2
1
3
3
3
3
3
3
1
CD34 cultured cells
1
1
1
1
1
CD34 mobilized primary cells
7
1
4
15
2
12
6
8
7
8
7
3
CD34 primary cells
1
2
8
1
1
1
2
2
2
2
2
CD4 memory primary cells
1
3
3
1
1
3
2
3
2
2
2
2
CD4 mobilized primary cells
3
1
CD4 naive primary cells
1
3
3
1
1
2
2
2
2
2
3
1
2
CD4 primary cells
2
1
3
2
1
1
1
1
1
1
1
1
CD4+ CD25+ CD127- Treg primary cells
2
2
2
2
2
2
1
CD4+ CD25- CD45RA+ naive primary cells
2
2
2
2
2
2
1
CD4+ CD25- CD45RO+ memory primary cells
2
2
2
2
2
2
1
CD4+ CD25- IL17+ PMA-ionomcyin stimulated Th17 primary cells
2
2
2
2
2
2
1
CD4+ CD25- IL17- PMA-ionomycin stimulated MACS purified Th primary cells
2
2
2
2
2
2
2
CD4+ CD25- Th primary cells
2
2
2
2
2
2
1
CD4+ CD25int CD127+ Tmem primary cells
2
2
2
2
2
2
2
CD56 mobilized primary cells
1
CD56 primary cells
1
1
2
1
1
1
1
1
1
1
1
CD8 memory primary cells
2
2
2
2
2
2
1
CD8 mobilized primary cells
1
CD8 naive primary cells
1
3
3
1
1
4
3
4
3
3
3
1
2
CD8 primary cells
2
3
4
2
1
1
1
1
1
1
1
ES-I3 cell line
2
2
2
2
2
2
2
2
2
ES-WA7 cell line
2
1
1
1
1
1
1
1
1
H1 +BMP4 cell line
6
2
13
H1 BMP4 derived mesendoderm cultured cells
4
2
2
2
1
4
2
2
2
4
2
2
2
2
1
1
1
2
1
4
1
2
2
2
2
18
H1 BMP4 derived trophoblast cultured cells
2
2
2
1
3
4
2
3
3
3
4
2
2
2
2
2
2
2
2
3
1
2
2
2
2
2
2
H1 cell line
5
3
4
4
5
2
13
6
2
8
7
7
7
5
2
3
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
3
2
1
1
H1 derived embryoid body cultured cells
1
H1 derived mesenchymal stem cells
2
2
2
2
1
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
1
2
2
2
1
1
1
14
H1 derived neuronal progenitor cultured cells
5
4
2
2
4
3
1
4
3
4
3
1
1
2
1
1
2
2
5
1
2
1
1
2
2
14
H9 cell line
3
1
1
2
3
2
2
2
3
2
2
2
1
2
2
2
2
2
2
2
2
2
2
2
2
2
2
3
1
1
2
1
1
1
1
H9 derived embryoid body cultured cells
1
H9 derived neuron cultured cells
2
1
1
1
1
1
1
1
H9 derived neuronal progenitor cultured cells
1
1
1
1
1
1
1
1
HUES 28 cell line
1
HUES1 cell line
1
HUES1 derived embryoid body cultured cells
1
HUES13 cell line
1
HUES3 cell line
1
HUES3 derived embryoid body cultured cells
1
HUES44 cell line
1
HUES45 cell line
1
HUES45 derived embryoid body cultured cells
1
HUES48 cell line
1
2
2
2
2
2
2
2
1
HUES49 cell line
1
HUES53 cell line
1
HUES6 cell line
1
2
2
2
2
2
2
1
2
HUES6 derived embryoid body cultured cells
1
HUES62 cell line
1
HUES63 cell line
1
HUES64 cell line
2
1
2
4
3
3
3
4
3
4
2
1
HUES65 cell line
1
HUES66 cell line
2
HUES8 cell line
1
HUES9 cell line
1
IMR90 cell line
7
1
1
4
4
1
9
3
2
2
3
2
2
2
2
4
2
2
2
4
2
2
2
3
2
2
2
3
3
3
2
2
2
2
2
1
1
Th17 primary cells
1
1
Treg primary cells
1
1
1
1
1
UCSF-4 cell line
2
2
2
2
2
2
2
2
2
1
adipose
5
3
1
1
adipose derived mesenchymal stem cells
5
5
5
5
4
5
5
adipose nuclei
1
5
5
5
5
5
5
5
1
adrenal gland
4
2
3
2
2
1
1
2
3
adrenal gland, fetal
1
5
2
7
1
1
1
1
1
1
1
1
bladder
2
1
2
1
1
1
1
bone marrow derived mesenchymal stem cells
2
4
4
4
4
4
4
4
4
brain, Brodmann 11
2
1
brain, angular gyrus
2
1
2
2
2
1
2
1
2
brain, anterior caudate
2
2
2
2
2
2
2
1
2
brain, astrocyte cultured cells
1
1
1
brain, cerebellum
4
1
1
brain, cingulate gyrus
2
2
2
2
2
1
2
1
2
brain, fetal
1
7
3
2
5
5
5
13
1
6
5
6
6
7
5
1
brain, hippocampus
1
brain, hippocampus middle
2
1
2
3
3
3
3
3
3
1
3
brain, inferior temporal lobe
2
2
2
2
2
2
2
1
2
brain, insular
1
1
brain, mid frontal lobe
1
2
2
2
2
1
2
1
2
brain, substantia nigra
1
2
2
2
2
2
2
2
1
2
breast, fibroblast primary cells
2
2
2
2
2
2
1
2
2
2
breast, luminal epithelial cells
2
5
5
3
2
1
1
1
1
1
breast, myoepithelial cells
5
4
4
3
2
2
2
2
2
2
2
2
breast, stem cells
1
4
4
2
2
1
breast, vHMEC
1
1
1
2
2
2
1
2
2
1
1
1
1
1
chondrocytes from bone marrow derived mesenchymal stem cells
3
5
4
4
4
4
4
4
4
colon smooth muscle
2
1
2
1
2
2
2
3
1
1
colonic mucosa
2
2
2
2
2
2
2
2
2
duodenum mucosa
2
1
2
2
2
2
2
2
2
1
duodenum smooth muscle
2
2
2
2
2
2
1
esophagus
2
2
4
2
2
2
2
2
2
fibroblast primary cell line
6
fibroblasts, skin
6
6
gastric
5
3
2
4
2
2
2
1
2
4
1
hESC-derived CD184+ endoderm cultured cells
2
2
3
2
1
1
1
2
hESC-derived CD56+ ectoderm cultured cells
4
6
2
1
2
2
2
1
2
hESC-derived CD56+ mesoderm cultured cells
2
2
2
1
2
3
1
2
2
hSKM cell line
3
3
3
3
3
3
3
3
heart
1
heart, aorta
6
2
3
2
2
1
2
2
2
heart, fetal
1
1
2
11
12
1
2
2
1
1
1
1
1
heart, left ventricle
4
2
2
2
2
2
2
2
3
heart, right atrium
3
1
1
1
1
1
1
2
1
heart, right ventricle
5
2
3
2
2
1
2
2
2
iPS DF 19.11 cell line
4
2
1
1
1
2
2
2
2
2
2
3
1
iPS DF 19.7 cell line
1
1
iPS DF 4.7 cell line
1
iPS DF 6.9 cell line
2
1
1
1
2
2
2
2
2
2
1
1
iPS-11a cell line
1
1
1
iPS-11b cell line
1
iPS-11c cell line
1
iPS-15b cell line
2
2
1
1
1
1
1
1
iPS-17a cell line
1
iPS-17b cell line
3
iPS-18a cell line
1
1
1
1
1
1
1
1
1
iPS-18b cell line
1
2
1
iPS-18c cell line
2
1
2
1
1
1
1
iPS-20b cell line
5
1
4
2
2
2
3
2
2
1
iPS-27b cell line
1
iPS-27e cell line
1
kidney
2
2
2
2
2
2
2
2
kidney renal cortex, fetal
10
3
18
kidney renal pelvis, fetal
11
2
18
kidney, fetal
1
5
10
29
1
1
1
1
1
1
1
1
2
large intestine
3
large intestine, fetal
1
7
2
15
1
1
1
1
1
2
2
1
liver
3
2
4
4
4
4
4
4
2
2
liver, fetal
3
lung
1
2
3
2
2
2
1
2
2
lung, fetal
2
11
18
36
1
3
3
2
2
2
2
2
muscle, fetal
2
33
2
53
4
2
2
2
3
2
2
2
neurosphere cultured cells, cortex derived
2
2
2
4
4
2
2
1
2
2
2
neurosphere cultured cells, ganglionic eminence derived
3
2
2
4
5
4
3
2
3
3
3
1
1
ovary
2
1
1
1
1
1
1
1
1
1
1
ovary, fetal
1
1
pancreas
2
2
2
2
2
2
2
3
2
2
pancreatic islets
1
1
2
2
2
2
3
2
2
2
1
2
penis foreskin fibroblast primary cells
1
3
3
3
2
4
1
3
3
3
2
3
3
3
2
penis foreskin keratinocyte primary cells
2
3
3
3
3
4
1
3
3
3
2
4
3
1
2
1
1
penis foreskin melanocyte primary cells
1
3
3
3
5
4
1
3
3
3
2
3
3
3
peripheral blood mononuclear primary cells
2
3
3
3
3
5
2
2
4
3
2
2
2
placenta
1
1
6
1
1
1
1
1
1
1
1
placenta, amnion
2
3
3
1
1
1
1
1
1
1
placenta, basal plate
2
4
4
1
placenta, chorion smooth
2
4
4
1
1
1
1
1
1
placenta, trophoblast
4
4
4
1
placenta, villi
2
4
4
psoas muscle
3
3
1
1
5
2
2
1
2
1
4
rectal mucosa
1
2
2
2
2
2
2
2
2
2
rectal smooth muscle
1
1
1
1
1
1
1
1
1
1
sigmoid colon
2
3
3
2
2
2
2
2
2
skeletal muscle
2
2
2
3
3
3
3
3
3
3
1
skin, fetal
17
skin, nevus
1
1
1
small intestine
4
3
1
1
2
2
2
2
2
2
3
1
small intestine, fetal
1
6
7
13
1
1
1
1
1
1
1
1
spinal cord, fetal
1
3
5
1
1
1
1
1
1
1
1
spleen
3
3
3
2
2
2
2
2
3
4
spleen, fetal
2
1
stomach mucosa
2
1
1
1
1
1
1
1
stomach smooth muscle
2
1
2
1
2
2
2
2
2
1
stomach, fetal
1
8
14
1
1
1
1
1
1
1
1
testes, fetal
1
2
testis, spermatozoa primary cells
6
thymus
2
1
1
1
1
1
1
1
1
thymus, fetal
1
6
2
11
1
1
1
1
1
2
1
1