GEO DataSets

(Submitter supplied) Recent studies have identified circular RNAs (circRNAs) expressed from the Epstein-Barr virus (EBV) and Kaposi’s sarcoma herpesvirus (KSHV) human DNA tu- mor viruses. To gain initial insights into the potential relevance of EBV circRNAs in virus biology and disease, we assessed the circRNAome of the interspecies homologue rhesus macaque lymphocryptovirus (rLCV) in a naturally occurring lymphoma from a simian immunodeficiency virus (SIV)-infected rhesus macaque. more...

Organism:

Macacine gammaherpesvirus 4; Macaca mulatta; Murid herpesvirus 68; Human gammaherpesvirus 8; Homo sapiens; Mus musculus

Type:

Other

Platforms:

GPL26009 GPL25719 GPL26010

10 Samples

Download data: BED

(Submitter supplied) Comparing to matched normal mucosa, WTX was lost in most of human gastric cancers (Zhang et al., 2016). We analyzed the microRNA expression profiling among WTX low human colorectal cancer tissues and matched adjacent WTX high normal colorectal mucosa. The aimed to identify the unique signature of miRNAs which related to WTX loss in human colorectal cancers.

Organism:

Homo sapiens; Mus musculus; Rattus norvegicus; Macacine gammaherpesvirus 4; Human gammaherpesvirus 8; Betapolyomavirus macacae

Type:

Non-coding RNA profiling by array

Platform:

GPL16414

11 Samples

Download data: GPR, TXT

(Submitter supplied) Comparing to matched normal mucosa, WTX was lost in most of human colorectal cancers (Zhang et al., 2016). We analyzed the microRNA expression profiling among WTX low human colorectal cancer tissues and matched adjacent WTX high normal colorectal mucosa. The aimed to identify the unique signature of miRNAs which related to WTX loss in human colorectal cancers.

Organism:

Rattus norvegicus; Macacine gammaherpesvirus 4; Homo sapiens; Human gammaherpesvirus 8; Betapolyomavirus macacae; Mus musculus

Type:

Non-coding RNA profiling by array

Platform:

GPL16414

10 Samples

Download data: GPR, TXT

(Submitter supplied) Epstein-Barr virus (EBV) has been etiologically linked to human malignancies including Nasopharyngeal Carcinoma (NPC). Although EBV-encoded miRNAs have been shown to contribute to viral latency, host cell survival and immune evasion, their direct impact on cancer progression in their human host remains unclear. In the current study, based on a miRNA expression profiling analysis of a larger number of clinical specimens using a miRNA array platform containing human, EBV and other species miRNA probes., we found that some EBV-miR-BARTs were highly expressed in NPC. more...

Organism:

Rattus norvegicus; Macacine gammaherpesvirus 4; Homo sapiens; Human gammaherpesvirus 8; Betapolyomavirus macacae; Mus musculus

Type:

Non-coding RNA profiling by array

Platform:

GPL16414

40 Samples

Download data: GPR

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Rattus norvegicus; Macacine gammaherpesvirus 4; Homo sapiens; Mus musculus; Human gammaherpesvirus 8; Betapolyomavirus macacae

Type:

Expression profiling by high throughput sequencing; Non-coding RNA profiling by array

Platforms:

GPL11154 GPL16414

44 Samples

Download data: GPR, TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Oryza sativa; Saccharum officinarum; Bombyx mori; Lemur catta; Lagothrix lagotricha; Macaca nemestrina; Homo sapiens; Canis lupus familiaris; Sus scrofa; Human betaherpesvirus 5; Monodelphis domestica; Takifugu rubripes; Arabidopsis thaliana; Sorghum bicolor; Caenorhabditis briggsae; Caenorhabditis elegans; Anopheles gambiae; Drosophila melanogaster; Drosophila pseudoobscura; Apis mellifera; Xenopus laevis; Xenopus tropicalis; Ateles geoffroyi; Gorilla gorilla; Bos taurus; Mus musculus; Rattus norvegicus; Human gammaherpesvirus 8; Macacine gammaherpesvirus 4; Saguinus labiatus; Tetraodon nigroviridis; Physcomitrium patens; Zea mays; Danio rerio; Macaca mulatta; Pan troglodytes; Pongo pygmaeus; human gammaherpesvirus 4; Gallid alphaherpesvirus 2; Schmidtea mediterranea; Betapolyomavirus macacae; Populus trichocarpa; Glycine max; Medicago truncatula; Gallus gallus; Pan paniscus; Ovis aries; Murid gammaherpesvirus 4

Type:

Expression profiling by array; Non-coding RNA profiling by array

Platforms:

GPL10558 GPL6844

16 Samples

Download data: GPR

(Submitter supplied) Background: Similar to replicating myoblasts, many rhabdomyosarcoma cells express the myogenic determination gene MyoD. In contrast to myoblasts, rhabdomyosarcoma cells do not make the transition from a regulative growth phase to terminal differentiation. Previously we demonstrated that the forced expression of MyoD with its E-protein dimerization partner was sufficient to induce differentiation and suppress multiple growth-promoting genes, suggesting that the dimer was targeting a switch that regulated the transition from growth to differentiation. more...

Organism:

Medicago truncatula; Sorghum bicolor; Physcomitrium patens; Populus trichocarpa; Glycine max; Bombyx mori; Lemur catta; Lagothrix lagotricha; Pan troglodytes; Sus scrofa; Zea mays; Caenorhabditis briggsae; Xenopus laevis; Xenopus tropicalis; Gallus gallus; Ateles geoffroyi; Mus musculus; Human gammaherpesvirus 8; Saguinus labiatus; Schmidtea mediterranea; Human betaherpesvirus 5; human gammaherpesvirus 4; Betapolyomavirus macacae; Arabidopsis thaliana; Oryza sativa; Saccharum officinarum; Caenorhabditis elegans; Anopheles gambiae; Apis mellifera; Danio rerio; Macaca mulatta; Gorilla gorilla; Pongo pygmaeus; Homo sapiens; Bos taurus; Gallid alphaherpesvirus 2; Macacine gammaherpesvirus 4; Tetraodon nigroviridis; Drosophila melanogaster; Drosophila pseudoobscura; Macaca nemestrina; Pan paniscus; Canis lupus familiaris; Ovis aries; Rattus norvegicus; Monodelphis domestica; Takifugu rubripes; Murid gammaherpesvirus 4

Type:

Non-coding RNA profiling by array

Platform:

GPL6844

4 Samples

Download data: GPR

(Submitter supplied) We have used microarray profiling to examine the expression of viral microRNAs (miRNAs) in two independently derived nasal natural killer T cell lymphoma (NKTCL) cell lines, SNK6 and SNT16. The goal of the study was to investigate the role of the viral miRNAs in the genesis and maintenance of NKTCLs.

Organism:

Human alphaherpesvirus 2; Macacine gammaherpesvirus 4; Merkel cell polyomavirus; Macaca mulatta rhadinovirus; Gallid alphaherpesvirus 2; Murid gammaherpesvirus 4; Gallid alphaherpesvirus 3; Betapolyomavirus hominis; Homo sapiens; Human alphaherpesvirus 1; Human betaherpesvirus 5; Murid betaherpesvirus 1; Human immunodeficiency virus 1; human gammaherpesvirus 4; JC polyomavirus; Human gammaherpesvirus 8; Betapolyomavirus macacae

Type:

Non-coding RNA profiling by array

Platform:

GPL13920

2 Samples

Download data: TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Betapolyomavirus macacae; Mus musculus; Human gammaherpesvirus 8; Rattus norvegicus; Homo sapiens; Macacine gammaherpesvirus 4

Type:

Expression profiling by array; Non-coding RNA profiling by array

Platforms:

GPL7089 GPL7088

38 Samples

Download data: GPR

(Submitter supplied) Human embryonic stem (hES) cells have unique features: self-renewal ability and pluripotency. They can be continuously cultured in undifferentiated state and give rise to cells and tissues of all three germ layers. Thus hES cells provide a resource not only for cell replacement therapy but also for studying human developmental biology. We aimed to identify the unique signature of miRNAs in human embryonic stem cells. more...

Organism:

Rattus norvegicus; Macacine gammaherpesvirus 4; Homo sapiens; Mus musculus; Human gammaherpesvirus 8; Betapolyomavirus macacae

Type:

Non-coding RNA profiling by array

Platform:

GPL7089

21 Samples

Download data: GPR

(Submitter supplied) This is a miRNA expression profiling using an updated platform (CCDTM-miRNA850-version 4p1.4) based on the Platform GPL7089 (CCDTM-miRNA850-version 4). Protocol: Oligos sythesized by Operon with 3' amine modification and purified by desalting. Oligos are adjusted to the same concentration and resuspend in 2mM phosphate buffer at 25mM oligo concentration and spotted on CodeLink(TM) Activated Slides (GE Healthcare) using an Omnigrid robotic arrayer (Genomic Solutions).

Organism:

Homo sapiens; Mus musculus; Rattus norvegicus; Human gammaherpesvirus 8; Macacine gammaherpesvirus 4; Betapolyomavirus macacae

4 Series

1 Related Platform

61 Samples

Download data

(Submitter supplied) Human and Virus miRNA microarray with 100% coverage of mature miRNAs listed in miRBase version 13.0. Protocol: Arrays are made based on µParaflo microfluidic technology (Atactic Technologies). On the µParaflo microfluidic chip, each detection probe consists of a chemically modified nucleotide coding segment complementary to target microRNA (from miRBase, http://www.mirbase.org/) or other RNA (control or customer defined sequences) and a spacer segment of polyethylene glycol to extend the coding segment away from the substrate. more...

Organism:

Homo sapiens; Human alphaherpesvirus 1; Human alphaherpesvirus 2; Human betaherpesvirus 5; Murid betaherpesvirus 1; human gammaherpesvirus 4; Gallid alphaherpesvirus 2; JC polyomavirus; Human immunodeficiency virus 1; Murid gammaherpesvirus 4; Gallid alphaherpesvirus 3; Human gammaherpesvirus 8; Macacine gammaherpesvirus 4; Merkel cell polyomavirus; Macaca mulatta rhadinovirus; Betapolyomavirus hominis; Betapolyomavirus macacae

1 Series

1 Related Platform

2 Samples

Download data

(Submitter supplied) Human and Virus miRNA microarray with 100% coverage of mature miRNAs listed in miRBase version 13.0 Protocol: Arrays are made based µParaflo microfluidic technology (Atactic Technologies). On the µParaflo microfluidic chip, each detection probe consists of a chemically modified nucleotide coding segment complementary to target microRNA (from miRBase, http://www.mirbase.org/) or other RNA (control or customer defined sequences) and a spacer segment of polyethylene glycol to extend the coding segment away from the substrate. more...

Organism:

Homo sapiens; Human alphaherpesvirus 1; Human alphaherpesvirus 2; Human betaherpesvirus 5; Murid betaherpesvirus 1; human gammaherpesvirus 4; Gallid alphaherpesvirus 2; JC polyomavirus; Human immunodeficiency virus 1; Murid gammaherpesvirus 4; Gallid alphaherpesvirus 3; Human gammaherpesvirus 8; Macacine gammaherpesvirus 4; Merkel cell polyomavirus; Macaca mulatta rhadinovirus; Betapolyomavirus hominis; Betapolyomavirus macacae

1 Related Platform

Download data

(Submitter supplied) This is a full representation of the condensed array in Platform GPL8949. Protocol: Oligos sythesized by Operon with 3' amine modification and purified by desalting. Oligos are adjusted to the same concentration and resuspend in 2mM phosphate buffer at 25mM oligo concentration and spotted on CodeLink(TM) Activated Slides (GE Healthcare) using an Omnigrid robotic arrayer (Genomic Solutions).

Organism:

Homo sapiens; Mus musculus; Rattus norvegicus; Human gammaherpesvirus 8; Macacine gammaherpesvirus 4; Betapolyomavirus macacae

2 Series

3 Related Platforms

21 Samples

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(Submitter supplied) The array contains microRNA probes for multiple organisms annotated in the miRBase database (Release 8.1). Protocol: The multi-organism array was manufactured by spotting the contents of v8.1 of the miRCURY LNA Array ready to spot probe set from Exiqon onto glass microscope slides.

Organism:

Physcomitrium patens; Populus trichocarpa; Arabidopsis thaliana; Glycine max; Medicago truncatula; Oryza sativa; Saccharum officinarum; Sorghum bicolor; Zea mays; Caenorhabditis briggsae; Caenorhabditis elegans; Bombyx mori; Anopheles gambiae; Drosophila melanogaster; Drosophila pseudoobscura; Apis mellifera; Danio rerio; Xenopus laevis; Xenopus tropicalis; Gallus gallus; Lemur catta; Ateles geoffroyi; Lagothrix lagotricha; Macaca mulatta; Macaca nemestrina; Gorilla gorilla; Pan paniscus; Pan troglodytes; Pongo pygmaeus; Homo sapiens; Canis lupus familiaris; Sus scrofa; Bos taurus; Ovis aries; Mus musculus; Rattus norvegicus; Human betaherpesvirus 5; human gammaherpesvirus 4; Gallid alphaherpesvirus 2; Monodelphis domestica; Takifugu rubripes; Murid gammaherpesvirus 4; Human gammaherpesvirus 8; Macacine gammaherpesvirus 4; Saguinus labiatus; Schmidtea mediterranea; Tetraodon nigroviridis; Betapolyomavirus macacae

2 Series

4 Samples

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