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Platform GPL16414 Query DataSets for GPL16414
Status Public on Jun 30, 2015
Title CCDTM-miRNA850-version 4p1.4
Technology type spotted oligonucleotide
Distribution non-commercial
Organisms Homo sapiens; Mus musculus; Rattus norvegicus; Human gammaherpesvirus 8; Macacine gammaherpesvirus 4; Betapolyomavirus macacae
Manufacturer NIH Clinical Center, Dept. of Transfusion Medicine, Immunogenetics Section (NIH/CC/DTM)
Manufacture protocol Oligos sythesized by Operon with 3' amine modification and purified by desalting. Oligos are adjusted to the same concentration and resuspend in 2mM phosphate buffer at 25mM oligo concentration and spotted on CodeLink(TM) Activated Slides (GE Healthcare) using an Omnigrid robotic arrayer (Genomic Solutions).
Support glass
Coating polyacrymide hydrogel polymer
 
Description This is a miRNA expression profiling using an updated platform (CCDTM-miRNA850-version 4p1.4) based on the Platform GPL7089 (CCDTM-miRNA850-version 4).
 
Submission date Dec 19, 2012
Last update date Mar 07, 2017
Contact name Xin Li
E-mail(s) xinli268@gmail.com
Phone 86 20 62789438
Organization name Southern medical university
Department Cancer research institute
Street address Southern medical university
City Guangzhou
State/province Province
ZIP/Postal code 510515
Country China
 
Samples (61) GSM1055398, GSM1055399, GSM1055400, GSM1055401, GSM1055402, GSM1055403 
Series (4)
GSE42945 The novel functional effects of exogenous EBV-miR-BARTs on NPC progression
GSE43039 microRNA expression profiling of human nasopharyngeal Carcinoma tissues and Chronic Nasopharyngitis specimens
GSE94881 microRNA expression profiling among WTX low human colorectal cancer tissues and matched adjacent WTX high normal colorectal mucosa
Relations
Affiliated with GPL7089

Data table header descriptions
ID NIH mAdb well id plus replicate number
mAdB_WELL_ID NIH mAdb plate-well identifier for oligo sample
Block spot block position in array
Row row number in array
Column column number in array
OLIGO_ID Oligo identifier
miRNA_ID mirBASE identifiers
SPOT_ID

Data table
ID mAdB_WELL_ID Block Row Column OLIGO_ID miRNA_ID SPOT_ID
1_6519882 6519882 13 1 1 MIMAT0003343:1a1 hcmv-miR-UL70-3p
2_6519882 6519882 13 1 2 MIMAT0003343:1a1 hcmv-miR-UL70-3p
1_6519883 6519883 9 1 1 MIMAT0000241:1a2 hsa-miR-208
2_6519883 6519883 9 1 2 MIMAT0000241:1a2 hsa-miR-208
1_6519884 6519884 5 1 1 MIMAT0003342:1a3 hcmv-miR-UL70-5p
2_6519884 6519884 5 1 2 MIMAT0003342:1a3 hcmv-miR-UL70-5p
1_6519885 6519885 1 1 1 MIMAT0000075:1a4 hsa-miR-20a
2_6519885 6519885 1 1 2 MIMAT0000075:1a4 hsa-miR-20a
1_6519886 6519886 13 1 3 MIMAT0003341:1a5 hcmv-miR-US4
2_6519886 6519886 13 1 4 MIMAT0003341:1a5 hcmv-miR-US4
1_6519887 6519887 9 1 3 MIMAT0000076:1a6 hsa-miR-21
2_6519887 6519887 9 1 4 MIMAT0000076:1a6 hsa-miR-21
1_6519888 6519888 5 1 3 MIMAT0000062:1a7 hsa-let-7a
2_6519888 6519888 5 1 4 MIMAT0000062:1a7 hsa-let-7a
1_6519889 6519889 1 1 3 MIMAT0000267:1a8 hsa-miR-210
2_6519889 6519889 1 1 4 MIMAT0000267:1a8 hsa-miR-210
1_6519890 6519890 13 1 5 MIMAT0000063:1a9 hsa-let-7b
2_6519890 6519890 13 1 6 MIMAT0000063:1a9 hsa-let-7b
1_6519891 6519891 9 1 5 MIMAT0000268:1a10 hsa-miR-211
2_6519891 6519891 9 1 6 MIMAT0000268:1a10 hsa-miR-211

Total number of rows: 1712

Table truncated, full table size 94 Kbytes.




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Supplementary data files not provided
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