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Series GSE43039 Query DataSets for GSE43039
Status Public on Jun 30, 2015
Title microRNA expression profiling of human nasopharyngeal Carcinoma tissues and Chronic Nasopharyngitis specimens
Platform organisms Homo sapiens; Mus musculus; Rattus norvegicus; Human gammaherpesvirus 8; Macacine gammaherpesvirus 4; Betapolyomavirus macacae
Sample organism Homo sapiens
Experiment type Non-coding RNA profiling by array
Summary Epstein-Barr virus (EBV) has been etiologically linked to human malignancies including Nasopharyngeal Carcinoma (NPC). Although EBV-encoded miRNAs have been shown to contribute to viral latency, host cell survival and immune evasion, their direct impact on cancer progression in their human host remains unclear. In the current study, based on a miRNA expression profiling analysis of a larger number of clinical specimens using a miRNA array platform containing human, EBV and other species miRNA probes., we found that some EBV-miR-BARTs were highly expressed in NPC. Accordingly, further exploration of the potential roles and regulatory mechanisms of some important EBV-miR-BARTs in NPC progression was carried out.
We applied a miRNA expression profiling analysis in 20 poor or undifferentiated NPC (Nasopharyngeal Carcinoma) matched with 20 benign chronic nasopharyngitis (CNP) specimens using a miRNA array platform containing human, EBV and other species miRNA probes.
 
Overall design Two-group experiment, NPC vs CNP. Biological repelicates: 20 NPCs, 20 CNPs. One replicate per array.
 
Contributor(s) Li X, Ye Y
Citation(s) 24606633, 26135619
Submission date Dec 19, 2012
Last update date Mar 07, 2017
Contact name Xin Li
E-mail(s) xinli268@gmail.com
Phone 86 20 62789438
Organization name Southern medical university
Department Cancer research institute
Street address Southern medical university
City Guangzhou
State/province Province
ZIP/Postal code 510515
Country China
 
Platforms (1)
GPL16414 CCDTM-miRNA850-version 4p1.4
Samples (40)
GSM1055398 Chronic Nasopharyngitis tissue 1
GSM1055399 Chronic Nasopharyngitis tissue 2
GSM1055400 Chronic Nasopharyngitis tissue 3
This SubSeries is part of SuperSeries:
GSE42945 The novel functional effects of exogenous EBV-miR-BARTs on NPC progression
Relations
BioProject PRJNA184666

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE43039_RAW.tar 8.7 Mb (http)(custom) TAR (of GPR)
Processed data included within Sample table

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