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Links from GEO DataSets

Items: 20

1.

RNA Subcellular CAGE Localization from ENCODE/RIKEN

(Submitter supplied) This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Piero Carninci mailto:carninci@riken.jp). If you have questions about the Genome Browser track associated with this data, contact ENCODE (mailto:genome@soe.ucsc.edu). This track shows 5' cap analysis gene expression (CAGE) tags and clusters in RNA extracts (http://hgwdev.cse.ucsc.edu/cgi-bin/hgEncodeVocab?type=rnaExtract) from different sub-cellular localizations (http://hgwdev.cse.ucsc.edu/cgi-bin/hgEncodeVocab?type=localization) in multiple cell lines (http://hgwdev.cse.ucsc.edu/cgi-bin/hgEncodeVocab?type=cellType). more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL9052 GPL10999 GPL11154
78 Samples
Download data: BED, BEDRNAELEMENTS, BIGWIG, GTF, TXT
Series
Accession:
GSE34448
ID:
200034448

PubMed Full text in PMC Similar studies ENCODESRA Run Selector

2.

Targeted RT-PCR assays spanning unannotated splice junctions sequenced by Roche 454.

(Submitter supplied) The ENCODE projects seeks to identify and characterize functional elements in the human genome. Throughout the scale-up phase of ENCODE, the transcriptome group has generate Long RNA-Seq, Small RNA-Seq, Cap-Analysis of Gene Expression (CAGE), and RNA-PET short read data on the Illumina platform for ~ 40 different human primary and transformed cell lines in replicate. From these data several high-resolution and discrete features/elements have been mined out (5’ caps, splice junctions, polyadenylation sites, small RNAs, etc…). more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL9186
3 Samples
Download data: PSL, TXT
Series
Accession:
GSE38886
ID:
200038886

PubMed Full text in PMC Similar studies ENCODEAnalyze with GEO2RSRA Run Selector

3.

RNA Subcellular Localization by Paired End diTag Sequencing from ENCODE/GIS

(Submitter supplied) This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Yijun Ruan mailto:ruanyj@gis.a-star.edu.sg). If you have questions about the Genome Browser track associated with this data, contact ENCODE (mailto:genome@soe.ucsc.edu). This track is produced as part of the ENCODE Transcriptome Project. It shows the starts and ends of full length mRNA transcripts determined by GIS paired-end ditag (PET) sequencing using RNA extracts (http://hgwdev.cse.ucsc.edu/cgi-bin/hgEncodeVocab?type=rnaExtract) from different sub-cellular localizations (http://hgwdev.cse.ucsc.edu/cgi-bin/hgEncodeVocab?type=localization) in different cell lines (http://hgwdev.cse.ucsc.edu/cgi-bin/hgEncodeVocab?type=cellType). more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL11154 GPL9115 GPL10999
31 Samples
Download data: BED, BIGWIG
Series
Accession:
GSE33600
ID:
200033600

PubMed Full text in PMC Similar studies ENCODESRA Run Selector

4.

RNA-seq from ENCODE/Caltech

(Submitter supplied) This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (mailto:georgi@caltech.edu for data coordination/informatics/experimental questions, mailto:diane@caltech.edu for informatics questions, mailto:bawilli_91125@yahoo.com for experimental questions). If you have questions about the Genome Browser track associated with this data, contact ENCODE (mailto:genome@soe.ucsc.edu). more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL9052
24 Samples
Download data: BAI, BAM, BIGBED, BIGWIG, GTF, TXT
Series
Accession:
GSE33480
ID:
200033480

PubMed Full text in PMC Similar studies ENCODEAnalyze with GEO2RSRA Run Selector

5.

ENCODE Cold Spring Harbor Labs Long RNA-seq

(Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf This SuperSeries is composed of the SubSeries listed below.
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing
4 related Platforms
84 Samples
Download data: BAM, BB, BEDRNAELEMENTS, BIGWIG, GFF, GTF, PDF
Series
Accession:
GSE26284
ID:
200026284

PubMed Full text in PMC Similar studies ENCODESRA Run Selector

6.

Small RNA-seq from ENCODE/Cold Spring Harbor Lab

(Submitter supplied) This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Jonathan Preall jpreall@cshl.edu (Generation 0 Data from Hannon Lab), Carrie Davis davisc@cshl.edu (experimental), Alex Dobin dobin@cshl.edu (computational), Wei Lin wlin@cshl.edu (computational), Tom Gingeras gingeras@cshl.edu (primary investigator)). If you have questions about the Genome Browser track associated with this data, contact ENCODE (mailto:genome@soe.ucsc.edu). more...
Organism:
Homo sapiens
Type:
Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL10999 GPL11154 GPL9052
87 Samples
Download data: BAM, BEDRNAELEMENTS, BIGWIG, GTF, PDF, TXT
Series
Accession:
GSE24565
ID:
200024565

PubMed Full text in PMC Similar studies ENCODEAnalyze with GEO2RSRA Run Selector

7.

Control ChIP-seq from whole organism (ENCSR535RLJ)

(Submitter supplied) Input control for ChIP-seq on transgenic flies expressing CG11696-eGFP fusion proteins. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
Organism:
Drosophila melanogaster
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL25244
1 Sample
Download data: TXT
Series
Accession:
GSE259211
ID:
200259211

PubMed Full text in PMC Similar studies modENCODE

8.

TF ChIP-seq from whole organism (ENCSR535LKO)

(Submitter supplied) ChIP-seq against eGFP-pqm-1 in L3 larva worms. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
Organism:
Caenorhabditis elegans
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL13776
2 Samples
Download data: BED, BIGBED, BIGWIG, TXT
Series
Accession:
GSE259210
ID:
200259210

PubMed Full text in PMC Similar studies modENCODE

9.

Control ChIP-seq from whole organism (ENCSR534YJS)

(Submitter supplied) Input ChIP-seq in L4 larva worms. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
Organism:
Caenorhabditis elegans
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL13776
2 Samples
Download data: BIGWIG, TXT
Series
Accession:
GSE259209
ID:
200259209

PubMed Full text in PMC Similar studies modENCODE

10.

TF ChIP-seq from whole organism (ENCSR534TFA)

(Submitter supplied) ChIP-seq of transgenic worms expressing CEH-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
Organism:
Caenorhabditis elegans
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL18245
2 Samples
Download data: BED, BIGBED, BIGWIG, TXT
Series
Accession:
GSE259208
ID:
200259208

PubMed Full text in PMC Similar studies modENCODE

11.

Control ChIP-seq from whole organism (ENCSR534JVP)

(Submitter supplied) Input ChIP-seq in late embryonic worms. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
Organism:
Caenorhabditis elegans
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL13776
2 Samples
Download data: BIGWIG, TXT
Series
Accession:
GSE259207
ID:
200259207

PubMed Full text in PMC Similar studies modENCODE

12.

TF ChIP-seq from whole organism (ENCSR533CXT)

(Submitter supplied) ChIP-seq on transgenic flies expressing BEAF-32-eGFP fusion proteins. The IP was performed using an anti-GFP antibody. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
Organism:
Drosophila melanogaster
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL21306
3 Samples
Download data: BED, BIGBED, BIGWIG, TXT
Series
Accession:
GSE259206
ID:
200259206

PubMed Full text in PMC Similar studies modENCODE

13.

Control ChIP-seq from whole organism (ENCSR533CSZ)

(Submitter supplied) This is the ChIP-seq control of transgenic worms expressing F49E8.2-eGFP fusion proteins. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
Organism:
Caenorhabditis elegans
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL13657
1 Sample
Download data: BIGWIG, TXT
Series
Accession:
GSE259205
ID:
200259205

PubMed Full text in PMC Similar studies modENCODE

14.

TF ChIP-seq from whole organism (ENCSR533AOQ)

(Submitter supplied) ChIP-seq on transgenic worms expressing cebp-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
Organism:
Caenorhabditis elegans
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL26672
2 Samples
Download data: BED, BIGBED, BIGWIG, TXT
Series
Accession:
GSE259204
ID:
200259204

PubMed Full text in PMC Similar studies modENCODE

15.

TF ChIP-seq from whole organism (ENCSR532YPP)

(Submitter supplied) ChIP-seq on transgenic flies expressing disco-r-eGFP fusion proteins. The IP was performed using an anti-GFP antibody. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
Organism:
Drosophila melanogaster
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL13304
2 Samples
Download data: BED, BIGBED, BIGWIG, TXT
Series
Accession:
GSE259203
ID:
200259203

PubMed Full text in PMC Similar studies modENCODE

16.

TF ChIP-seq from whole organism (ENCSR532EVV)

(Submitter supplied) ChIP-seq on transgenic flies expressing Dbx-eGFP fusion proteins. The IP was performed using an anti-GFP antibody. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
Organism:
Drosophila melanogaster
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL25244
3 Samples
Download data: BED, BIGBED, BIGWIG, TXT
Series
Accession:
GSE259202
ID:
200259202

PubMed Full text in PMC Similar studies modENCODE

17.

TF ChIP-seq from whole organism (ENCSR532BHA)

(Submitter supplied) Input control for ChIP-seq on transgenic flies expressing CrebB-eGFP fusion proteins. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
Organism:
Drosophila melanogaster
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL21306
3 Samples
Download data: BED, BIGBED, BIGWIG, TXT
Series
Accession:
GSE259201
ID:
200259201

PubMed Full text in PMC Similar studies modENCODE

18.

Control ChIP-seq from whole organism (ENCSR531CCR)

(Submitter supplied) Input ChIP-seq in L3 larva worms. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
Organism:
Caenorhabditis elegans
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL9309
2 Samples
Download data: BIGWIG, TXT
Series
Accession:
GSE259200
ID:
200259200

PubMed Full text in PMC Similar studies modENCODE

19.

Control ChIP-seq from whole organism (ENCSR530XBH)

(Submitter supplied) This is the ChIP-seq control of transgenic worms expressing C08G9.2-eGFP fusion proteins. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
Organism:
Caenorhabditis elegans
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL13657
1 Sample
Download data: BIGWIG, TXT
Series
Accession:
GSE259199
ID:
200259199

PubMed Full text in PMC Similar studies modENCODE

20.

TF ChIP-seq from whole organism (ENCSR530MRJ)

(Submitter supplied) ChIP-seq on transgenic flies expressing CG8319-eGFP fusion proteins. The IP was performed using an anti-GFP antibody. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
Organism:
Drosophila melanogaster
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL13304
3 Samples
Download data: BED, BIGBED, BIGWIG, TXT
Series
Accession:
GSE259198
ID:
200259198

PubMed Full text in PMC Similar studies modENCODE

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