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10400 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL11154
GSE16256	UCSD Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	878	BAM BED WIG SRA Run Selector	UCSD AND SALK	Aug 03, 2009
GSE16368	UCSF-UBC Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	529	BAM BED TAB WIG SRA Run Selector	UCSF-UBC CENTER	Aug 03, 2009
GSE17312	BI Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Homo sapiens	633	BAM BED CEL WIG SRA Run Selector	BROAD INSTITUTE	Aug 05, 2009
GSE18927	University of Washington Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array Expression profiling by high throughput sequencing	Homo sapiens	758	BAM BED CEL TXT WIG SRA Run Selector	Northwest REMC	Jan 06, 2010
GSE24565	Small RNA-seq from ENCODE/Cold Spring Harbor Lab	Non-coding RNA profiling by high throughput sequencing	Homo sapiens	87	BAM BEDRNAELEMENTS BIGWIG GTF PDF TXT SRA Run Selector	ENCODE DCC	Oct 08, 2010
GSE26284	ENCODE Cold Spring Harbor Labs Long RNA-seq	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	84	BAM BB BEDRNAELEMENTS BIGWIG GFF GTF PDF SRA Run Selector	ENCODE DCC	Dec 28, 2010
GSE26328	DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	53	BAM BIGWIG BROADPEAK NARROWPEAK TXT SRA Run Selector	ENCODE DCC	Dec 29, 2010
GSE29611	Histone Modifications by ChIP-seq from ENCODE/Broad Institute	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	296	BAM BIGWIG BROADPEAK TXT SRA Run Selector	ENCODE DCC	Jun 02, 2011
GSE29943	Unstressed HeLa cells and ELAVL1/HuR knock down conditions: polyA RNA-Seq, small RNA-Seq, and PAR-CLIP	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	9	BED TXT WIG SRA Run Selector	Marvin Jens	Jun 30, 2011
GSE30567	ENCODE Cold Spring Harbor Labs Long RNA-seq (hg19)	Expression profiling by high throughput sequencing	Homo sapiens	99	BAM BEDRNAELEMENTS BIGWIG GFF GTF PDF TXT SRA Run Selector	ENCODE DCC	Jul 13, 2011
GSE30611	[E-MTAB-513] Illumina Human Body Map 2.0 Project	Expression profiling by high throughput sequencing	Homo sapiens	48	PDF SRA Run Selector	European Bioinformatics Institute	Jul 14, 2011
GSE29069	Global DNA Hypomethylation Coupled to Repressive Chromatin Domain Formation and Gene Silencing in Breast Cancer	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	14	BAM	Gary Chung Hon	Sep 16, 2011
GSE29120	Bisulfite sequencing of ChIP DNA on breast cancer cells (HCC1954)	Methylation profiling by high throughput sequencing	Homo sapiens	3	BAM SRA Run Selector	Gary Chung Hon	Sep 16, 2011
GSE29127	Genome-wide DNA methylation mapping in breast cancer cells (HCC1954) and normal breast cells (HMEC)	Methylation profiling by high throughput sequencing	Homo sapiens	2	BAM SRA Run Selector	Gary Chung Hon	Sep 16, 2011
GSE32625	RNA-Seq of human neurons derived from iPS cells Reveals candidate long non-coding RNAs Involved in neurogenesis and neuropsychiatric disorders.	Expression profiling by high throughput sequencing	Homo sapiens	2	BAM SRA Run Selector	Mingyan Lin	Oct 06, 2011
GSE29195	Genome-wide location analysis of WNT (Tcf7l2) and BMP (SMAD1) in human hematopoeitic cell lines co-occupied with lineage specific regulators (GATA1, GATA2, CEBPA)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	29	WIG YLF SRA Run Selector	Teresa Venezia Bowman	Oct 07, 2011
GSE29196	Lineage regulators direct BMP and Wnt pathways to cell-specific programs during differentiation and regeneration	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	55	WIG YLF	Teresa Venezia Bowman	Oct 07, 2011
GSE32307	Transposon-based construction of strand-specific RNA-seq libraries	Expression profiling by high throughput sequencing	Homo sapiens	15	RPKM SRA Run Selector	Jason Gertz	Oct 10, 2011
GSE33600	RNA Subcellular Localization by Paired End diTag Sequencing from ENCODE/GIS	Expression profiling by high throughput sequencing	Homo sapiens	31	BED BIGWIG SRA Run Selector	ENCODE DCC	Nov 10, 2011
GSE33889	Genome-wide Runx2 occupancy in prostate cancer cells suggests a role in regulating secretion.	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	TXT SRA Run Selector	Houtan Noushmehr	Nov 29, 2011