UCSD Human Reference Epigenome Mapping Project

PARP1- and CTCF-mediated interactions between active and repressed chromatin at the lamina promote oscillating transcription

Comprehensive comparative analysis of RNA sequencing methods for degraded or low input samples

LncRNA DEANR1 facilitates human endoderm differentiation by activating FOXA2 expression

RNA-seq expression analysis to determine expression profile similarities between fibroblasts, induced endothelial cells from fibroblasts, and human dermal microvascular endothelial cells

Transcriptional and Epigenetic Dynamics During Specification of Human Embryonic Stem Cells

Genome-wide and experimental resolution of relative translation elongation speed at individual gene level in human cells

The ABRF Next-Generation Sequencing Study (ABRF-NGS): Multi-platform and cross-methodological reproducibility of transcriptome profiling by RNA-seq.

FoxA1 inhibits androgen receptor expression and suppresses prostate cancer metastasis [DU145, ChIP-seq]

The ABRF Next-Generation Sequencing Study (ABRF-NGS): Multi-platform and cross-methodological reproducibility of transcriptome profiling by RNA-seq [Illumina HiSeq 2500]

Long Noncoding RNA HNF1A-AS1 Regulates Proliferation and Migration in Esophageal Adenocarcinoma Cells

Whole-genome Haplotype Reconstruction using Proximity-ligation and Shotgun Sequencing

Viral small RNAs in Sindbis virus-infected mammalian cells

De novo sequencing of circulating microRNAs in locally advanced breast cancer

Stretch responsive miRNAs in human aortic valve interstitial cells

Differential Protein Occupancy Profiling of the mRNA Transcriptome

IVT-seq reveals extreme bias in RNA-sequencing

Landscape and variation of RNA secondary structure across the human transcriptome

DUX4 binding to retroelements creates promoters that are active in FSHD muscle and testis.

The 3′ extremity of mRNA unveiled by TAIL-seq