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Platform GPL15797 Query DataSets for GPL15797
Status Public on May 31, 2013
Title Agilent-019738 Custom 8 X 15k Exon Microarray
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent
Manufacture protocol The custom microarray was manufactured by Agilent Technologies using a proprietary non-contact industrial inkjet printing process, in which oligo monomers are deposited uniformly onto specially-prepared glass slides. This in situ synthesis process prints 60-mer length oligonucleotide probes, base-by-base, from digital sequence files. The precise inkjet process enables the delivery of extremely small, accurate volumes (picoliters) of the chemicals to be spotted. (Source: Agilent website)
 
Description Agilent-019738 Custom 8 X 15k exon microarray interrogating a set of genes previously known to form oncogenic gene fusions in human cancer.
Sureprint Technology (60mer oligonucleotide)
 
Submission date Jul 12, 2012
Last update date May 31, 2013
Contact name Craig Patrick Giacomini
E-mail(s) cpg17@stanford.edu
Organization name Stanford University
Department Pathology
Lab Jonathan Pollack (M.D./Ph.D.) Laboratory
Street address 269 Campus Drive (CCSR 3245A)
City Stanford
State/province CA
ZIP/Postal code 94305-5176
Country USA
 
Samples (16) GSM960095, GSM960096, GSM960097, GSM960098, GSM960099, GSM960100 
Series (2)
GSE39287 Breakpoint analysis of transcriptional and genomic profiles uncovers novel gene fusions spanning multiple human cancer types (exon expression)
GSE45137 Breakpoint analysis of transcriptional and genomic profiles uncovers novel gene fusions spanning multiple human cancer types

Data table header descriptions
ID
SEQUENCE The nucleotide sequence for a given microarray probe
ProbeName Agilent asigned probe identifier
ORF Gene Symbol: The gene interrogated by a given microarray probe

Data table
ID SEQUENCE ProbeName ORF
A_23_P100127 CGGTCTCTAGCAAAGATTCAGGCATTGGATCTGTTGCAGGTAAACTGAACCTAAGTCCTT A_23_P100127 CASC5
A_23_P100883 CTTGATTGGTAAGCTCTCCAAATGATGAGTTCTAGTAAACTCTGATTTTTGCCTCTGGAT A_23_P100883 SUZ12
A_23_P101831 CCTTCGCTACTACTATCGCCGCGACATCGTGCGCAAGAGCGGGGGGCGAAAGTACACGTA A_23_P101831 ETV2
A_23_P10276 ACTGTACCTCAACACCTTTGCCAACACCTTGGGAAAAGCTGAGTACCTGAAGAACAACAT A_23_P10276 ERBB4
A_23_P103361 CCCACCCACATGTGACACATATGCACCTTGTGTCTGTACACGTGTCCTGTAGTTGCGTGG A_23_P103361 LCK
A_23_P103414 CAAGGTTGTGTCTTTAAGGGTGGTTCATTTTCTCTGACCTTTTGTTACTCAAAGTAAAGT A_23_P103414 YTHDF2
A_23_P103932 TTGCAGAGCACTTCCCACCTCTCTGAATAGTGTGTATGTGTTGGTTTATTGATTCTGTAA A_23_P103932 FGR
A_23_P104188 AGGTTCTCCAGAGTCGGAACTGAGGGTTGGAACTATACCCGGGACCAAACTCACGGACCA A_23_P104188 ELF3
A_23_P104413 CCGGGGCAGCTCCACCTCCCCAGCCCGCGCCCCCGGGACGCCTCCGCCTCCGCGCGGCAG A_23_P104413 DUX4
A_23_P105251 ATGTATAGTCTGTATACGTTTTGAGGAGAAATTTGATAATGACACTGTTTCCTGATAATA A_23_P105251 GLI1
A_23_P105264 TTTTGTTTTTGTTTTTGTTTTAAGAACCTGCAGTTTGACTCTTCATCGTTCATCTAGGGG A_23_P105264 ETV6
A_23_P105644 ATCAGGAGATATGCAAACATATCAGATCCGAACTACACCTTCAGCTACTTCTCTGCCACA A_23_P105644 ATF1
A_23_P105646 GACATTAACCATGACAAATTCAGGCAGTACTCAGCAAGGTACAACTATTCTTCAGTATGC A_23_P105646 ATF1
A_23_P106131 ATGTTTTCACCCTTTCTACTTTGTCAGAAACACTGAACAGAGTTTTGTCTTTTCTAATCC A_23_P106131 KTN1
A_23_P106887 TATTGACTGGTTTGATGGTAAAGAATTCTCCGGAAATCCTATCAAGGTCTCATTTGCTAC A_23_P106887 FUS
A_23_P106973 AGGCTCTGTTCCTCAATGGCCTTTTGCTACGTGCCTCCCGAGAAATTTGTCTTTTTGTAT A_23_P106973 41161
A_23_P106985 AGAGCCTGTGCTGAGGTCCAGGGAGTGTGGAGAGCTCCTGGTGTCGAGGACTGAGACTGA A_23_P106985 MLLT6
A_23_P107154 AAGTGGTACTGTTACAATGACAGCAGCTGTAAGGAACTTCACCCGGATGAAATTGACACC A_23_P107154 USP32
A_23_P108376 CTGTGTGGAGAGCATGCATCAGGTGGAAGAAGACTACCTGTTTGAAAAAGCAGAAGTCAA A_23_P108376 THADA
A_23_P10839 GGCACCACGTGTAAGGTGATGTGCACATATCAAGAAGTCAGAGAAAACACTTTCCTGGAT A_23_P10839 41154

Total number of rows: 13433

Table truncated, full table size 1445 Kbytes.




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