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Platform GPL16332 Query DataSets for GPL16332
Status Public on Jan 16, 2013
Title [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [MMBGX-Ensembl64]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site
Catalog number 901085
 
Description This platform contains certain probeset groupings used for analysis with the MMBGX software platform (PMID 19854940)
http://www.bgx.org.uk/software/mmbgx.html
For data processing, the MMBGX software suite uses raw data CEL files directly as input.
 
Submission date Nov 28, 2012
Last update date Nov 28, 2012
Contact name Nevan Krogan
E-mail(s) nevan.krogan@ucsf.edu
Phone 415-476-2980
Fax 415-514-9736
Organization name University of California, San Francisco
Department Cellular & Molecular Pharmacology
Lab Krogan
Street address 1700 4th Street
City San Francisco
ZIP/Postal code 94158
Country USA
 
Samples (12) GSM1045351, GSM1045352, GSM1045353, GSM1045354, GSM1045355, GSM1045356 
Series (2)
GSE42574 CBFb Stabilizes HIV Vif to Counteract APOBEC3 at the Expense of RUNX1 Target Gene Expression [gene expression]
GSE42576 CBFb Stabilizes HIV Vif to Counteract APOBEC3 at the Expense of RUNX1 Target Gene Expression
Relations
Alternative to GPL6244 (Alternative CDF [official])

Data table header descriptions
ID
Probes Probes assigned to the indicated Ensembl gene ID
SPOT_ID Ensembl Gene ID

Data table
ID Probes SPOT_ID
ENSG00000000003 32123,76520,96549,176991,194645,218359,240138,292329,325624,341638,389349,419212,438564,441220,496140,537249,548224,596642,619056,649942,676001,680502,698176,722387,724947,727535,733730,742203 ENSG00000000003
ENSG00000000005 59793,65572,66078,130767,240045,241450,259893,279142,298804,306551,349159,354211,359740,368918,370582,400700,438811,477604,499746,523089,536033,572862,581330,616298,666692,668199,669539,698485,735349,735920 ENSG00000000005
ENSG00000000419 26311,138544,154396,154579,161367,212241,212627,218369,344049,351029,403146,439081,444294,444972,452290,568219,586681,587159,587183,607822,616066,621411,631295,639037,697392,721042,739768 ENSG00000000419
ENSG00000000457 43068,79169,90590,94842,98514,109266,121143,127912,131854,186793,211039,234811,240288,254291,317240,332848,351240,352173,359628,367491,386696,388893,396826,420467,433169,443541,459104,480058,490391,505665,548529,562605,572889,609415,637602,723709,735407,740731,740734 ENSG00000000457
ENSG00000000460 21594,53004,79399,144804,153875,165399,177797,207058,228856,255538,301973,317439,341529,345011,351830,385417,388968,427139,428596,443898,454158,456004,459786,505315,513448,522937,526470,541196,549884,576310,610144,613729,634845,652889,658102,694338,704819,707528,726657 ENSG00000000460
ENSG00000000938 23752,24299,44914,77031,111756,170226,175814,221827,236257,238012,244296,271197,276677,307378,321650,347724,400671,421015,436089,442850,455142,466073,494463,503811,570778,614620,621602,624427,626184,685356,715705 ENSG00000000938
ENSG00000000971 6726,15367,60241,65914,66256,68213,72885,98574,142905,148265,148609,155992,159337,160519,177682,192794,201152,212740,248971,256674,267486,309568,315929,317944,360620,362459,362461,371262,375819,399655,399990,402862,407757,441448,443964,518198,542980,554980,572861,586504,587184,594085,597398,620494,626406,640590,660029,662127,663053,667024,683816,683824,692419,703750,704886,708932,719688,720801,729348,733554,737321,737850 ENSG00000000971
ENSG00000001036 50974,84326,101682,204349,224023,228460,233737,296205,328613,354313,438335,442647,464258,476996,536764,562113,590765,641791,672437,714416,732463,736644,741910 ENSG00000001036
ENSG00000001084 4517,30467,57329,90183,104940,143905,316208,376642,377014,378303,389839,402825,452600,463733,490829,532802,541666,575819,601336,614179,678896,681839,693852,725276 ENSG00000001084
ENSG00000001167 10036,42893,118682,124663,146281,190084,231806,248001,275695,302833,336648,352257,360099,390054,444480,448700,472884,517335,549124,572600,585971,589543,647048,664787,672226,686126,714172,735399 ENSG00000001167
ENSG00000001460 31725,43627,48674,71085,91573,93164,109740,119640,138227,140258,206315,225448,243254,253688,289890,290596,312257,312398,341483,458799,528086,561600,566832,592388,595324,622668,651794,657676,705948,727196 ENSG00000001460
ENSG00000001461 21609,93930,159992,177731,179651,211665,229212,244730,252168,266359,280586,324176,337268,373742,384337,416608,441557,449139,477039,481669,559091,560106,567200,610002,625084,649695,659358 ENSG00000001461
ENSG00000001497 4546,27324,40925,68255,111855,117111,155553,169382,183637,231987,232153,247122,299096,312225,348669,348735,372252,382258,417728,455248,457651,458359,468962,473757,484673,488644,492234,500941,531835,575980,607552,610599,644871,653853,660545,667809,673207,689817,696909,739115 ENSG00000001497
ENSG00000001561 50459,66858,81590,93923,135610,136807,138852,148976,156824,203569,232442,235194,247418,248004,256835,269795,275335,277642,321353,352895,357540,412663,421139,433089,433827,456810,521771,538275,558947,567885,588958,666449,676445,711589,738545 ENSG00000001561
ENSG00000001617 9024,13270,25503,48928,56068,60896,78638,81047,85713,91837,93619,94947,103344,121002,122060,134828,163576,178934,179235,200530,211513,235266,236744,251285,266453,315036,346199,362803,370253,373812,392907,432954,433248,446397,465512,468445,473956,476935,500216,522954,641105,659519,662614,700979,705043,713827 ENSG00000001617
ENSG00000001626 10198,15246,15457,40999,47605,69187,69508,97084,107391,130789,142520,144049,146200,160995,167141,169291,180880,203180,211652,255775,271935,285486,346310,346679,365235,374794,403269,403844,408802,453036,455161,474180,516245,526155,577126,618540,648348,661370,713728,725585,734521,740507 ENSG00000001626
ENSG00000001629 1513,9396,19974,29109,46712,50748,62318,68583,85524,108882,129656,162882,163264,165144,190546,256902,262628,272834,291662,298916,310444,311525,311638,317938,321893,323377,323697,408349,414654,426959,442206,448703,450508,477830,479409,496305,502084,504453,563037,577856,586486,622581,685478,699207,700604,704169,716858,733297 ENSG00000001629
ENSG00000001630 10580,67335,121238,123909,124629,145008,149204,218649,219865,295662,305928,334843,338760,388752,393738,454720,467803,469925,482011,506017,522383,527205,547486,553281,583364,586317,608359,646344,672232,678191,678449,680145,701880 ENSG00000001630
ENSG00000001631 30825,51388,69167,105766,123823,146800,168552,246574,323699,352788,357402,369235,407523,412442,438478,438501,449632,453697,463701,472266,487735,526375,537808,542552,555834,567014,620377,623835,639669,684846,701129,706030,713570,732687,741636 ENSG00000001631
ENSG00000002016 15688,56870,62846,75217,83579,97887,137786,156466,170739,188994,310192,332783,361011,396669,451215,480485,537862,610424,674159,717181,728241 ENSG00000002016

Total number of rows: 28875

Table truncated, full table size 7391 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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