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Status
Public on Dec 18, 2023
Title
Agilent-086099 MECP2 ReReDesign G4125A
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Homo sapiens
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Arrays of this design have barcodes that begin with 16086099 or 2586099 Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
Dec 14, 2023
Last update date
Dec 19, 2023
Contact name
Christopher Grochowski
E-mail(s)
Christopher.Grochowski@bcm.edu
Organization name
Baylor College of Medicine
Department
Molecular and Human Genetics
Street address
1 Baylor Plaza
City
Houston
State/province
Texas
ZIP/Postal code
77006
Country
USA
Samples (11)
GSM7979327 , GSM7979328 , GSM7979329 , GSM7979330 , GSM7979331 , GSM7979332
Series (1)
GSE250451
Break-induced replication underlies formation of inverted triplications and generates unexpected diversity in haplotype structures
Data table header descriptions
ID
COL
ROW
Agilent Prob Name
SPOT_ID
CONTROL_TYPE
GB_ACC
ENSEMBLE_ID
ORF
GENE_NAME
ACCESSION_STRING
CHROMOSOMAL_LOCATION
CYTOBAND
DESCRIPTION
Data table
ID
COL
ROW
Agilent Prob Name
SPOT_ID
CONTROL_TYPE
GB_ACC
ENSEMBLE_ID
ORF
GENE_NAME
ACCESSION_STRING
CHROMOSOMAL_LOCATION
CYTOBAND
DESCRIPTION
1
532
340
HsCGHBrightCorner
CONTROL
pos
2
532
338
DarkCorner2
CONTROL
pos
3
532
336
DarkCorner2
CONTROL
pos
4
532
334
DarkCorner2
CONTROL
pos
5
532
332
DarkCorner2
CONTROL
pos
6
532
330
DarkCorner2
CONTROL
pos
7
532
328
DarkCorner2
CONTROL
pos
8
532
326
DarkCorner2
CONTROL
pos
9
532
324
DarkCorner2
CONTROL
pos
10
532
322
DarkCorner2
CONTROL
pos
11
532
320
DarkCorner2
CONTROL
pos
12
532
318
DarkCorner2
CONTROL
pos
13
532
316
DarkCorner2
CONTROL
pos
14
532
314
DarkCorner2
CONTROL
pos
15
532
312
DarkCorner2
CONTROL
pos
16
532
310
DarkCorner2
CONTROL
pos
17
532
308
DarkCorner2
CONTROL
pos
18
532
306
DarkCorner2
CONTROL
pos
19
532
304
DarkCorner2
CONTROL
pos
20
532
302
DarkCorner2
CONTROL
pos
Total number of rows: 178626 Table truncated, full table size 21369 Kbytes .
Supplementary data files not provided