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Platform GPL34100 Query DataSets for GPL34100
Status Public on Jan 17, 2024
Title GGP Mouse (GIGA-MUGA)
Technology type oligonucleotide beads
Distribution commercial
Organism Mus musculus
Manufacturer Illumina
Manufacture protocol See manufacturer's website (http://illumina.com)
 
 
Submission date Jan 17, 2024
Last update date Jan 17, 2024
Contact name GEO admin
E-mail(s) geo@ncbi.nlm.nih.gov
Organization name NCBI/NLM/NIH
Street address 9000 Rockville Pike
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (120) GSM8021443, GSM8021444, GSM8021445, GSM8021446, GSM8021447, GSM8021448 
Series (2)
GSE253484 Idd5 favours robust neonatal development of highly autoreactive regulatory T cells in the NOD mouse
GSE254746 GigaMUGA SNP data of wild mice from Barcelona Robertsonian System (BRbS)

Data table header descriptions
ID
Illumina ID
SPOT_ID
IlmnStrand
SNP
AddressA_ID
AlleleA_ProbeSeq
AddressB_ID
AlleleB_ProbeSeq
GenomeBuild
Chr
MapInfo
Ploidy
Species
Source
SourceVersion
SourceStrand
SourceSeq
TopGenomicSeq
BeadSetID

Data table
ID Illumina ID SPOT_ID IlmnStrand SNP AddressA_ID AlleleA_ProbeSeq AddressB_ID AlleleB_ProbeSeq GenomeBuild Chr MapInfo Ploidy Species Source SourceVersion SourceStrand SourceSeq TopGenomicSeq BeadSetID
AmpR002 AmpR002-1_B_F_2279371334 AmpR002 BOT [T/G] 66614885 GTGGGTTACATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTT 37 Y 11000000 diploid Mus musculus mouseDiv 1 BOT NGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTT[T/G] [A/C]AAACTCTCAAGGATCTTACCGCTGTTGAGATCCAGTTCGATGTAACCCACN 1035
B6_01-011986786-S B6_01-011986786-S-1_B_F_2279379342 B6_01-011986786-S BOT [T/C] 32647153 TAAGAGAGCCAAAATTTTCCCCCAATTTCTGACTGTTATCCCAGAGAGTC 37 1 11986786 diploid Mus musculus mouseDiv 1 BOT NTAAGAGAGCCAAAATTTTCCCCCAATTTCTGACTGTTATCCCAGAGAGTC[T/C]ACTCTGTTCTCCTGTATTATGTTGTTGTGAGGAATGTGTGACAGTTCAGT ACTGAACTGTCACACATTCCTCACAACAACATAATACAGGAGAACAGAGT[A/G]GACTCTCTGGGATAACAGTCAGAAATTGGGGGAAAATTTTGGCTCTCTTAN 1035
B6_01-033811444-S B6_01-033811444-S-1_B_R_2279288089 B6_01-033811444-S BOT [T/A] 80671438 GTTCATTCACGCTGACAGTGAATGAAATACAAGCATTTTGATGACTGGGT 25673957 GTTCATTCACGCTGACAGTGAATGAAATACAAGCATTTTGATGACTGGGA 37 1 33811444 diploid Mus musculus mouseDiv 1 TOP NCAGGCTCCATGTGAGACCCTCAGCATCCCGATACTGTCAGGAATTGGTTT[A/T]CCCAGTCATCAAAATGCTTGTATTTCATTCACTGTCAGCGTGAATGAACC NCAGGCTCCATGTGAGACCCTCAGCATCCCGATACTGTCAGGAATTGGTTT[A/T]CCCAGTCATCAAAATGCTTGTATTTCATTCACTGTCAGCGTGAATGAACC 1035
B6_01-074963079-S B6_01-074963079-S-1_B_F_2279154252 B6_01-074963079-S BOT [T/C] 7635376 AAAAAATTGAAAGCTAGAAAAACATAGTGCCTGGGTCTGTAGCATTCAGA 37 1 74963079 diploid Mus musculus mouseDiv 1 BOT NAAAAAATTGAAAGCTAGAAAAACATAGTGCCTGGGTCTGTAGCATTCAGA[T/C]CCTGGGTCTGATATAGCTGTGACCAGGTTCCAAGAATTGCATCCTGCCCA TGGGCAGGATGCAATTCTTGGAACCTGGTCACAGCTATATCAGACCCAGG[A/G]TCTGAATGCTACAGACCCAGGCACTATGTTTTTCTAGCTTTCAATTTTTTN 1035
B6_01-093593614-S B6_01-093593614-S-1_T_F_2279180162 B6_01-093593614-S TOP [A/G] 48672849 GCACACGCACCACCTCTCCCGGTGACACATGCATGCCTATAACTACACAC 37 1 93593614 diploid Mus musculus mouseDiv 1 TOP NGCACACGCACCACCTCTCCCGGTGACACATGCATGCCTATAACTACACAC[A/G]AACACAAATCTTAAAAAGAGAAAAGAAGCCTGAATCATAGCAATAGAGAG NGCACACGCACCACCTCTCCCGGTGACACATGCATGCCTATAACTACACAC[A/G]AACACAAATCTTAAAAAGAGAAAAGAAGCCTGAATCATAGCAATAGAGAG 1035
B6_01-121012874-S B6_01-121012874-S-1_T_R_2279403757 B6_01-121012874-S TOP [A/G] 22669561 CTTGGAAAGGAGGCTGTAGGCAAATGAATTCACAGGAGCACACAGCAGGT 37 1 121012874 diploid Mus musculus mouseDiv 1 BOT NTCTGGACCACCCTCTTCAGGGAACTCTCCTTCTCTGGCCTCTATGCCTGG[T/C]ACCTGCTGTGTGCTCCTGTGAATTCATTTGCCTACAGCCTCCTTTCCAAG CTTGGAAAGGAGGCTGTAGGCAAATGAATTCACAGGAGCACACAGCAGGT[A/G]CCAGGCATAGAGGCCAGAGAAGGAGAGTTCCCTGAAGAGGGTGGTCCAGAN 1035
B6_01-150177251-S B6_01-150177251-S-1_B_F_2279424850 B6_01-150177251-S BOT [T/C] 25609273 TTAAATAGTTCTCCTTTCCTGTGCTGTTTGTGAGAGCTGAGCATAGACTA 37 1 150177251 diploid Mus musculus mouseDiv 1 BOT NTTAAATAGTTCTCCTTTCCTGTGCTGTTTGTGAGAGCTGAGCATAGACTA[T/C]CTTGGACTCATTTTATCAAATCTTTCTCTGATTCATCACTTTGCCAGACC GGTCTGGCAAAGTGATGAATCAGAGAAAGATTTGATAAAATGAGTCCAAG[A/G]TAGTCTATGCTCAGCTCTCACAAACAGCACAGGAAAGGAGAACTATTTAAN 1035
B6_01-178969734-S B6_01-178969734-S-1_T_F_2279163521 B6_01-178969734-S TOP [A/G] 11639896 AATTCCCCAAGATGAAACAATCTTAAATTCAAGTGTACATACAGCCAACA 37 1 178969374 diploid Mus musculus mouseDiv 1 TOP NAATTCCCCAAGATGAAACAATCTTAAATTCAAGTGTACATACAGCCAACA[A/G]CTCAAAATACAGAGAGTGGGGGCTCGACTGCAACAAGCTGCAGAGCCCCG NAATTCCCCAAGATGAAACAATCTTAAATTCAAGTGTACATACAGCCAACA[A/G]CTCAAAATACAGAGAGTGGGGGCTCGACTGCAACAAGCTGCAGAGCCCCG 1035
B6_01-196072469-S B6_01-196072469-S-1_B_R_2279181942 B6_01-196072469-S BOT [T/G] 90612177 TTGCAGATTCTATCTGCAAAGAACCTCTCATACCTGAAGTCTCCACTGTT 37 1 196072469 diploid Mus musculus mouseDiv 1 TOP NGGATCCTTCTTGGTCCTCCAAATTTCAGGAGTGATGCATTCAGCCTCTGT[A/C]AACAGTGGAGACTTCAGGTATGAGAGGTTCTTTGCAGATAGAATCTGCAA NGGATCCTTCTTGGTCCTCCAAATTTCAGGAGTGATGCATTCAGCCTCTGT[A/C]AACAGTGGAGACTTCAGGTATGAGAGGTTCTTTGCAGATAGAATCTGCAA 1050
B6_02-010654916-S B6_02-010654916-S-1_T_R_2279341768 B6_02-010654916-S TOP [A/G] 24620540 TATAGTGGGACAAGGTTTCTATACTTTCCAGAGCTGAGGGAGTAAGCTCA 37 2 10654916 diploid Mus musculus mouseDiv 1 BOT NGCAAGATGTGTTCTATCCAGCCTTGGCTTCATTAGTCAGGAGCAACAGAG[T/C]TGAGCTTACTCCCTCAGCTCTGGAAAGTATAGAAACCTTGTCCCACTATA TATAGTGGGACAAGGTTTCTATACTTTCCAGAGCTGAGGGAGTAAGCTCA[A/G]CTCTGTTGCTCCTGACTAATGAAGCCAAGGCTGGATAGAACACATCTTGCN 1035
B6_02-018045358-S B6_02-018045358-S-1_B_F_2279177416 B6_02-018045358-S BOT [T/C] 12602975 CTTGAGGTGTATTGACAACCTTGGTGTTCATTTTGCAGTGCTCAGTTTGC 37 2 18045358 diploid Mus musculus mouseDiv 1 BOT NCTTGAGGTGTATTGACAACCTTGGTGTTCATTTTGCAGTGCTCAGTTTGC[T/C]GGGCTGCTTTGTGAAGAAGAAGGGAATGGCGCAGACAATGTTCAATACTG CAGTATTGAACATTGTCTGCGCCATTCCCTTCTTCTTCACAAAGCAGCCC[A/G]GCAAACTGAGCACTGCAAAATGAACACCAAGGTTGTCAATACACCTCAAGN 1035
B6_02-030044009-S B6_02-030044009-S-1_B_R_2279250861 B6_02-030044009-S BOT [T/G] 99649893 GGAGACAGACACAATGTCAGCTTCCCCCACATACCAGCTCTGGGTCTGAC 37 2 30044009 diploid Mus musculus mouseDiv 1 TOP NAGCTTCCTTGGGCTTAACCTGTTTCATCTCCTCTAGCAGCCTGGCCATGG[A/C]GTCAGACCCAGAGCTGGTATGTGGGGGAAGCTGACATTGTGTCTGTCTCC NAGCTTCCTTGGGCTTAACCTGTTTCATCTCCTCTAGCAGCCTGGCCATGG[A/C]GTCAGACCCAGAGCTGGTATGTGGGGGAAGCTGACATTGTGTCTGTCTCC 1035
B6_02-047175333-S B6_02-047175333-S-1_B_R_2279244773 B6_02-047175333-S BOT [T/A] 82621264 CACTTTAGCCACTAGTGCACTGCTCCACATGTCTTGTTGGGGTAGTCCTT 17672977 CACTTTAGCCACTAGTGCACTGCTCCACATGTCTTGTTGGGGTAGTCCTA 37 2 47175333 diploid Mus musculus mouseDiv 1 TOP NAGAGAAGTAATTATCAGTCTTAGCAAGCTAAGAACTCTGTGAGCTACAAT[A/T]AGGACTACCCCAACAAGACATGTGGAGCAGTGCACTAGTGGCTAAAGTGC NAGAGAAGTAATTATCAGTCTTAGCAAGCTAAGAACTCTGTGAGCTACAAT[A/T]AGGACTACCCCAACAAGACATGTGGAGCAGTGCACTAGTGGCTAAAGTGC 1050
B6_02-080713295-S B6_02-080713295-S-1_B_F_2279280763 B6_02-080713295-S BOT [T/C] 11704251 CAATTGGTGATGCTTTGTGATAAGGCTGATGTACATGCAACACAGTGAGG 37 2 80713295 diploid Mus musculus mouseDiv 1 BOT NCAATTGGTGATGCTTTGTGATAAGGCTGATGTACATGCAACACAGTGAGG[T/C]GTCTGTTATCTAGGGTCTCTGAAGATCTGTGTGGAGTACAATTGCTGCTA TAGCAGCAATTGTACTCCACACAGATCTTCAGAGACCCTAGATAACAGAC[A/G]CCTCACTGTGTTGCATGTACATCAGCCTTATCACAAAGCATCACCAATTGN 1035
B6_02-104253454-S B6_02-104253454-S-1_B_R_2279443518 B6_02-104253454-S BOT [T/C] 36687936 TACTGGACTGTGAGCTTCTTGAGGGATGTGATGGTATCTGGTCTCAAGTC 37 2 104253454 diploid Mus musculus mouseDiv 1 TOP NTTTTCAGTCTCTGGTTGTTAGGTTAGAGAGGCTCTGTCCCCCCACAGGCT[A/G]GACTTGAGACCAGATACCATCACATCCCTCAAGAAGCTCACAGTCCAGTA NTTTTCAGTCTCTGGTTGTTAGGTTAGAGAGGCTCTGTCCCCCCACAGGCT[A/G]GACTTGAGACCAGATACCATCACATCCCTCAAGAAGCTCACAGTCCAGTA 1035
B6_02-122534474-S B6_02-122534474-S-1_B_R_2279185170 B6_02-122534474-S BOT [T/A] 2649215 TGTCTCTGGTCCCTAGTTCCTGGAAAAGAGCCTCCAGGACAGGAACACCT 2650939 TGTCTCTGGTCCCTAGTTCCTGGAAAAGAGCCTCCAGGACAGGAACACCA 37 2 122534474 diploid Mus musculus mouseDiv 1 TOP NTAAACAATCATGCCCAGAAACTGTGACTTGTCTCACATATCCTGAGGATA[A/T]GGTGTTCCTGTCCTGGAGGCTCTTTTCCAGGAACTAGGGACCAGAGACAC NTAAACAATCATGCCCAGAAACTGTGACTTGTCTCACATATCCTGAGGATA[A/T]GGTGTTCCTGTCCTGGAGGCTCTTTTCCAGGAACTAGGGACCAGAGACAC 1035
B6_02-155206453-S B6_02-155206453-S-1_B_F_2279406595 B6_02-155206453-S BOT [T/A] 27730933 GAAATCACACAGGTTGAGACACAGGACTGGAAGCCAGGTTTCCCTTTAGT 11636868 GAAATCACACAGGTTGAGACACAGGACTGGAAGCCAGGTTTCCCTTTAGA 37 2 155206453 diploid Mus musculus mouseDiv 1 BOT NTGAAATCACACAGGTTGAGACACAGGACTGGAAGCCAGGTTTCCCTTTAG[A/T]ACCCTGGAGTTCAGTCCCTCTGGTGTAGGGTGTGATCAGAGTCAAGGCTA TAGCCTTGACTCTGATCACACCCTACACCAGAGGGACTGAACTCCAGGGT[A/T]CTAAAGGGAAACCTGGCTTCCAGTCCTGTGTCTCAACCTGTGTGATTTCAN 1035
B6_02-178470578-S B6_02-178470578-S-1_T_R_2279165303 B6_02-178470578-S TOP [A/G] 48655990 GCAGCAGATGAAACAACTTACATAGATGCTTACCGACAAAAACATGCCAG 37 2 178470578 diploid Mus musculus mouseDiv 1 BOT NACTGGTCTAAGACTGAGCCAGGATGGGATCCACCAGGCATGGCTTCCTTG[T/C]CTGGCATGTTTTTGTCGGTAAGCATCTATGTAAGTTGTTTCATCTGCTGC GCAGCAGATGAAACAACTTACATAGATGCTTACCGACAAAAACATGCCAG[A/G]CAAGGAAGCCATGCCTGGTGGATCCCATCCTGGCTCAGTCTTAGACCAGTN 1050
B6_03-037129353-S B6_03-037129353-S-1_B_F_2279174337 B6_03-037129353-S BOT [T/C] 36740931 CCTAATGGCACCGATACTTATATATTGGGCTGGATAACTTTGCTGTCAGA 37 3 37129353 diploid Mus musculus mouseDiv 1 BOT NCCTAATGGCACCGATACTTATATATTGGGCTGGATAACTTTGCTGTCAGA[T/C]CCATTCCACACATTCCACAACATTCACTAGCATCCATGGCCCCTAGGGAC GTCCCTAGGGGCCATGGATGCTAGTGAATGTTGTGGAATGTGTGGAATGG[A/G]TCTGACAGCAAAGTTATCCAGCCCAATATATAAGTATCGGTGCCATTAGGN 1035
B6_03-082357013-S B6_03-082357013-S-1_B_R_2279332243 B6_03-082357013-S BOT [T/C] 67619978 CCAACCATACAAACAGAAATCAGCTTAGTCATGATAACTTATACCCATAT 37 3 82357013 diploid Mus musculus mouseDiv 1 TOP NGACAGTGTATGCTGTGGACATTAGGTGTCACCCAGCATCCTCATCTTTGG[A/G]ATATGGGTATAAGTTATCATGACTAAGCTGATTTCTGTTTGTATGGTTGG NGACAGTGTATGCTGTGGACATTAGGTGTCACCCAGCATCCTCATCTTTGG[A/G]ATATGGGTATAAGTTATCATGACTAAGCTGATTTCTGTTTGTATGGTTGG 1035

Total number of rows: 143469

Table truncated, full table size 53025 Kbytes.




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