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Status
Public on Apr 01, 2008
Title
HG17_HELP_Promoter
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Roche NimbleGen
Manufacture protocol
See Roche NimbleGen website
Catalog number
2005-07-20_HG17_HELP_Promoter (designid=2370) and 2006-10-26_HG17_HELP_Promoter (designid=4802)
Description
Custom DNA methylation microarray for the HELP assay, designed to cover 25,626 HpaII amplifiable fragments around promoter regions and imprinted regions of the human genome. Based on the May 2004 release of the human genome.
Contributor(s)
Figueroa ME , Melnick AM , Greally JM Submission date
Mar 18, 2008
Last update date
Jan 09, 2012
Contact name
Maria Eugenia Figueroa
E-mail(s)
mef162@miami.edu Organization name
University of Miiami
Department
Human Genetics
Lab
Maria Figueroa
Street address
1501 NW 10th Ave, BRB 709A, Locator code C227
City
Miami
State/province
FL
ZIP/Postal code
33136
Country
USA
Samples (1879)
GSM276159 , GSM276160 , GSM276161 , GSM276162 , GSM276163 , GSM276164
GSM276165 ,
GSM276167 ,
GSM276169 ,
GSM276170 ,
GSM276171 ,
GSM276172 ,
GSM276173 ,
GSM276174 ,
GSM360189 ,
GSM360190 ,
GSM360191 ,
GSM360192 ,
GSM360193 ,
GSM360194 ,
GSM360195 ,
GSM360196 ,
GSM360197 ,
GSM360198 ,
GSM360199 ,
GSM360200 ,
GSM360201 ,
GSM360202 ,
GSM360203 ,
GSM360204 ,
GSM360205 ,
GSM360206 ,
GSM360207 ,
GSM360208 ,
GSM360209 ,
GSM360210 ,
GSM360211 ,
GSM360212 ,
GSM360213 ,
GSM360214 ,
GSM360215 ,
GSM360216 ,
GSM360217 ,
GSM360218 ,
GSM360219 ,
GSM360220 ,
GSM360363 ,
GSM435179 ,
GSM435180 ,
GSM435181 ,
GSM435182 ,
GSM435183 ,
GSM435184 ,
GSM435185 ,
GSM435186 ,
GSM435187 ,
GSM435188 ,
GSM435189 ,
GSM435190 ,
GSM435191 ,
GSM435192 ,
GSM435193 ,
GSM435194 ,
GSM435195 ,
GSM435196 ,
GSM435197 ,
GSM435198 ,
GSM435199 ,
GSM435200 ,
GSM435201 ,
GSM435202 ,
GSM435203 ,
GSM435204 ,
GSM435205 ,
GSM435206 ,
GSM435207 ,
GSM435208 ,
GSM435209 ,
GSM435210 ,
GSM435211 ,
GSM435212 ,
GSM435213 ,
GSM435214 ,
GSM435215 ,
GSM435216 ,
GSM435217 ,
GSM435218 ,
GSM435219 ,
GSM435220 ,
GSM435221 ,
GSM435222 ,
GSM435223 ,
GSM435224 ,
GSM435225 ,
GSM435226 ,
GSM435227 ,
GSM435228 ,
GSM435229 ,
GSM435230 ,
GSM435231 ,
GSM435232 ,
GSM435233 ,
GSM435234 ,
GSM435235 ,
GSM435236 ,
GSM435237 ,
GSM435238 ,
GSM435239 ,
GSM435240 ,
GSM435241 ,
GSM435242 ,
GSM464737 ,
GSM464738 ,
GSM464739 ,
GSM464740 ,
GSM464741 ,
GSM464742 ,
GSM464743 ,
GSM464744 ,
GSM464745 ,
GSM464746 ,
GSM464747 ,
GSM464748 ,
GSM464749 ,
GSM464750 ,
GSM464751 ,
GSM464752 ,
GSM464753 ,
GSM464754 ,
GSM464755 ,
GSM464756 ,
GSM464757 ,
GSM464758 ,
GSM464759 ,
GSM464760 ,
GSM464761 ,
GSM464762 ,
GSM464763 ,
GSM464764 ,
GSM464765 ,
GSM464766 ,
GSM464767 ,
GSM464768 ,
GSM464769 ,
GSM464770 ,
GSM464771 ,
GSM464772 ,
GSM464773 ,
GSM464774 ,
GSM464775 ,
GSM464776 ,
GSM464777 ,
GSM464778 ,
GSM464779 ,
GSM464780 ,
GSM464781 ,
GSM464782 ,
GSM464783 ,
GSM464784 ,
GSM464785 ,
GSM464786 ,
GSM464787 ,
GSM464788 ,
GSM464789 ,
GSM464790 ,
GSM464791 ,
GSM464792 ,
GSM464793 ,
GSM464794 ,
GSM464795 ,
GSM464796 ,
GSM464797 ,
GSM464798 ,
GSM464799 ,
GSM464800 ,
GSM464801 ,
GSM464802 ,
GSM464803 ,
GSM464804 ,
GSM464805 ,
GSM464806 ,
GSM464807 ,
GSM464808 ,
GSM464809 ,
GSM464810 ,
GSM464811 ,
GSM464812 ,
GSM464813 ,
GSM464814 ,
GSM464815 ,
GSM464816 ,
GSM464817 ,
GSM464818 ,
GSM464819 ,
GSM464820 ,
GSM464821 ,
GSM464822 ,
GSM464823 ,
GSM464824 ,
GSM464825 ,
GSM464826 ,
GSM464827 ,
GSM464828 ,
GSM464829 ,
GSM464830 ,
GSM464831 ,
GSM464832 ,
GSM464833 ,
GSM464834 ,
GSM464835 ,
GSM464836 ,
GSM464837 ,
GSM464838 ,
GSM464839 ,
GSM464840 ,
GSM464841 ,
GSM464842 ,
GSM464843 ,
GSM464844 ,
GSM464845 ,
GSM464846 ,
GSM464847 ,
GSM464848 ,
GSM464849 ,
GSM464850 ,
GSM464851 ,
GSM464852 ,
GSM464853 ,
GSM464854 ,
GSM464855 ,
GSM464856 ,
GSM464857 ,
GSM464858 ,
GSM464859 ,
GSM464860 ,
GSM464861 ,
GSM464862 ,
GSM464863 ,
GSM464864 ,
GSM464865 ,
GSM464866 ,
GSM464867 ,
GSM464868 ,
GSM464869 ,
GSM464870 ,
GSM464871 ,
GSM464872 ,
GSM464873 ,
GSM464874 ,
GSM464875 ,
GSM464876 ,
GSM464877 ,
GSM464878 ,
GSM464879 ,
GSM464880 ,
GSM464881 ,
GSM464882 ,
GSM464883 ,
GSM464884 ,
GSM464885 ,
GSM464886 ,
GSM464887 ,
GSM464888 ,
GSM464889 ,
GSM464890 ,
GSM464891 ,
GSM464892 ,
GSM464893 ,
GSM464894 ,
GSM464895 ,
GSM464896 ,
GSM464897 ,
GSM464898 ,
GSM464899 ,
GSM464900 ,
GSM464901 ,
GSM464902 ,
GSM464903 ,
GSM464904 ,
GSM464905 ,
GSM464906 ,
GSM464907 ,
GSM464908 ,
GSM464909 ,
GSM464910 ,
GSM464911 ,
GSM464912 ,
GSM464913 ,
GSM464914 ,
GSM464915 ,
GSM464916 ,
GSM464917 ,
GSM464918 ,
GSM464919 ,
GSM464920 ,
GSM464921 ,
GSM464922 ,
GSM464923 ,
GSM464924 ,
GSM464925 ,
GSM464926 ,
GSM464927 ,
GSM464928 ,
GSM464929 ,
GSM464930 ,
GSM464931 ,
GSM464932 ,
GSM464933 ,
GSM464934 ,
GSM464935 ,
GSM464936 ,
GSM464937 ,
GSM464938 ,
GSM464939 ,
GSM464940 ,
GSM464941 ,
GSM464942 ,
GSM464943 ,
GSM464944 ,
GSM464945 ,
GSM464946 ,
GSM464947 ,
GSM464948 ,
GSM464949 ,
GSM464950 ,
GSM464951 ,
GSM464952 ,
GSM464953 ,
GSM464954 ,
GSM464955 ,
GSM464956 ,
GSM464957 ,
GSM464958 ,
GSM464959 ,
GSM464960 ,
GSM464961 ,
GSM464962 ,
GSM464963 ,
GSM464964 ,
GSM464965 ,
GSM464966 ,
GSM464967 ,
GSM464968 ,
GSM464969 ,
GSM464970 ,
GSM464971 ,
GSM464972 ,
GSM464973 ,
GSM464974 ,
GSM464975 ,
GSM464976 ,
GSM464977 ,
GSM464978 ,
GSM464979 ,
GSM464980 ,
GSM464981 ,
GSM464982 ,
GSM464983 ,
GSM464984 ,
GSM464985 ,
GSM464986 ,
GSM464987 ,
GSM464988 ,
GSM464989 ,
GSM464990 ,
GSM464991 ,
GSM464992 ,
GSM464993 ,
GSM464994 ,
GSM464995 ,
GSM464996 ,
GSM464997 ,
GSM464998 ,
GSM464999 ,
GSM465000 ,
GSM465001 ,
GSM465002 ,
GSM465003 ,
GSM465004 ,
GSM465005 ,
GSM465006 ,
GSM465007 ,
GSM465008 ,
GSM465009 ,
GSM465010 ,
GSM465011 ,
GSM465012 ,
GSM465013 ,
GSM465014 ,
GSM465015 ,
GSM465016 ,
GSM465017 ,
GSM465018 ,
GSM465019 ,
GSM465020 ,
GSM465021 ,
GSM465022 ,
GSM465023 ,
GSM465024 ,
GSM465025 ,
GSM465026 ,
GSM465027 ,
GSM465028 ,
GSM465029 ,
GSM465030 ,
GSM465031 ,
GSM465032 ,
GSM465033 ,
GSM465034 ,
GSM465035 ,
GSM465036 ,
GSM465037 ,
GSM465038 ,
GSM465039 ,
GSM465040 ,
GSM465041 ,
GSM465042 ,
GSM465043 ,
GSM465044 ,
GSM465045 ,
GSM465046 ,
GSM465047 ,
GSM465048 ,
GSM465049 ,
GSM465050 ,
GSM465051 ,
GSM465052 ,
GSM465053 ,
GSM465054 ,
GSM465055 ,
GSM465056 ,
GSM465057 ,
GSM465058 ,
GSM465059 ,
GSM465060 ,
GSM465061 ,
GSM465062 ,
GSM465063 ,
GSM465064 ,
GSM465065 ,
GSM465066 ,
GSM465067 ,
GSM465068 ,
GSM465069 ,
GSM465070 ,
GSM465071 ,
GSM465072 ,
GSM465073 ,
GSM465074 ,
GSM465075 ,
GSM465076 ,
GSM465077 ,
GSM465078 ,
GSM465079 ,
GSM465080 ,
GSM476851 ,
GSM476852 ,
GSM476853 ,
GSM476854 ,
GSM476855 ,
GSM476856 ,
GSM476857 ,
GSM476858 ,
GSM476859 ,
GSM476860 ,
GSM476861 ,
GSM476862 ,
GSM476863 ,
GSM476864 ,
GSM476865 ,
GSM476866 ,
GSM476867 ,
GSM476868 ,
GSM476869 ,
GSM476870 ,
GSM476871 ,
GSM476872 ,
GSM476873 ,
GSM476874 ,
GSM476875 ,
GSM476876 ,
GSM476877 ,
GSM476878 ,
GSM476879 ,
GSM476880 ,
GSM476881 ,
GSM476882 ,
GSM476883 ,
GSM476884 ,
GSM476885 ,
GSM476886 ,
GSM476887 ,
GSM476888 ,
GSM476889 ,
GSM476890 ,
GSM476891 ,
GSM476892 ,
GSM476893 ,
GSM476894 ,
GSM476895 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (23)
GSE10894 DNA methylation by HELP for Integrative epigenomic study in leukemia samples
GSE14417 Genome-wide DNA methylation in CEBPA mutant and CEBPA silenced AML
GSE17328 Genome-wide DNA methylation in MDS/secondary AML and de novo AML
GSE18700 Genome-wide DNA methylation profiling of Acute Myeloid Leukemia
GSE19243 Genome-wide DNA Methylation Analysis Reveals Novel Targets for Drug Development in Mantle Cell Lymphoma
GSE19671 Promoter hypermethylation in MLL-r leukemia: biology and therapeutic targeting
GSE23967 DNA methylation signatures define molecular subtypes of Diffuse Large B Cell Lymphoma
GSE24505 Leukemic IDH1 and IDH2 mutations result in a hypermethylation phenotype, disrupt TET2 function, and impair hematopoietic differentiation
GSE31101 Chemosensitization of DLBCL cells in vitro and in vivo by demethylating nucleoside analogues [methylation]
GSE31104 Chemosensitization of DLBCL cells in vitro and in vivo by demethylating nucleoside analogues
GSE31671 DNA Methyltransferase 1 and DNA Methylation Patterning Contribute to Germinal Center B-Cell Differentiation
GSE34937 Integrative Epigenomic Analysis Identifies Biomarkers and Therapeutic Targets in Adult B-Acute Lymphoblastic Leukemia [methylation profiling]
GSE34941 Integrative Epigenomic Analysis Identifies Biomarkers and Therapeutic Targets in Adult B-Acute Lymphoblastic Leukemia
GSE38295 Integrated Genetic and Epigenetic Analysis of Childhood ALL Reveals a Synergistic Role for Structural and Epigenetic Lesions In Determining Disease Phenotype [186 samples]
GSE42721 Methylome profiling reveals distinct alterations in phenotypic and mutational subgroups of myeloproliferative neoplasms (MPN)
GSE43860 DNA methylation in normal PC, MGUS, SMM and MM
GSE44860 Integrated Genetic and Epigenetic Analysis of Childhood ALL Reveals a Synergistic Role for Structural and Epigenetic Lesions In Determining Disease Phenotype [194 samples]
GSE44862 Integrated Genetic and Epigenetic Analysis of Childhood ALL Reveals a Synergistic Role for Structural and Epigenetic Lesions In Determining Disease Phenotype
GSE52151 Analysis of DNA methylation changes in normal human hematopoietic stem and progenitor cells
GSE52152 Analysis of RNA expression and DNA cytosine methylation in healthy human hematopoietic stem and progenitor cells
GSE54200 DNA methylation profiling in primary Diffuse Large B cell Lymphoma (DLBCL) and normal Germinal Center B Cells
GSE58165 Harnessing Noxa Demethylation to overcome Bortezomib resistance in Mantle Cell Lymphoma
GSE60233 Myelodysplastic syndrome marrow stroma shows widespread aberrant hypermethylation that is abrogated by treatment with DNMT inhibitors
Data table header descriptions ID BUILD version of the human genome used for this design
CHROMOSOME Chromosome number
RANGE_GB Accession.version NCBI HG17
SPOT_ID spot identifier
RANGE_START RANGE_STOP SEQ_LENGTH Length of target HpaII amplifiable fragment
DATE_ENTERED Date when the oligo was designed and entered
SOURCE_DB Genome database used as source for probe design
Data table ID BUILD CHROMOSOME RANGE_GB SPOT_ID RANGE_START RANGE_STOP SEQ_LENGTH DATE_ENTERED SOURCE_DB MSPI0406S00000183
June_2004
chr1
NC_000001.8
704380
705034
655
1/25/05
UCSC
MSPI0406S00000238
June_2004
chr1
NC_000001.8
830326
831454
1129
1/25/05
UCSC
MSPI0406S00000239
June_2004
chr1
NC_000001.8
831455
831719
265
1/25/05
UCSC
MSPI0406S00000300
June_2004
chr1
NC_000001.8
896556
897258
703
1/25/05
UCSC
MSPI0406S00000301
June_2004
chr1
NC_000001.8
897259
898420
1162
1/25/05
UCSC
MSPI0406S00000321
June_2004
chr1
NC_000001.8
911029
911278
250
1/25/05
UCSC
MSPI0406S00000352
June_2004
chr1
NC_000001.8
934488
934701
214
1/25/05
UCSC
MSPI0406S00000353
June_2004
chr1
NC_000001.8
935067
935270
204
1/25/05
UCSC
MSPI0406S00000354
June_2004
chr1
NC_000001.8
936841
937290
450
1/25/05
UCSC
MSPI0406S00000360
June_2004
chr1
NC_000001.8
940546
941019
474
1/25/05
UCSC
MSPI0406S00000361
June_2004
chr1
NC_000001.8
941020
941616
597
1/25/05
UCSC
MSPI0406S00000384
June_2004
chr1
NC_000001.8
957520
957727
208
1/25/05
UCSC
MSPI0406S00000385
June_2004
chr1
NC_000001.8
957906
958178
273
1/25/05
UCSC
MSPI0406S00000410
June_2004
chr1
NC_000001.8
976338
976581
244
1/25/05
UCSC
MSPI0406S00000433
June_2004
chr1
NC_000001.8
988332
988748
417
1/25/05
UCSC
MSPI0406S00000434
June_2004
chr1
NC_000001.8
988943
989299
357
1/25/05
UCSC
MSPI0406S00000435
June_2004
chr1
NC_000001.8
989300
989627
328
1/25/05
UCSC
MSPI0406S00000479
June_2004
chr1
NC_000001.8
1017581
1018333
753
1/25/05
UCSC
MSPI0406S00000480
June_2004
chr1
NC_000001.8
1018334
1018886
553
1/25/05
UCSC
MSPI0406S00000492
June_2004
chr1
NC_000001.8
1026215
1026705
491
1/25/05
UCSC
25626 2054 Kbytes .Supplementary file Size Download File type/resource GPL6604.ndf.gz
20.9 Mb
(ftp) (http) NDF
GPL6604.ngd.gz
17.2 Mb
(ftp) (http) NGD
GPL6604.pos.gz
5.2 Mb
(ftp) (http) POS
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