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Status
Public on Mar 01, 2009
Title
Nimblegen 2.1M HD2 Human Economy tiling array of hg18 at 205bp resolution set 01 of 4
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Nimblegen Systems Inc.
Manufacture protocol
Whole human genome tiling arrays
Description
The 4 genome scan arrays were based on NCBI36 build of the human genome (hg18) and contained a total of 4 * 2.1 million 50 to 75-mer oligonucleotides, positioned at about every 205 basepairs (bp) throughout the human genome. There are a total of 3 arrays. This is set 01.
Web link
http://www.nimblegen.com/ Contributor(s)
Heintzman ND , Hon GC , Hawkins D , Kheradpour P , Stark A , Stuart RK , Harp LF , Ye Z , Lee L , Ching KA , Ching CW , Antosiewicz JE , Liu H , Zhang X , Green RD , Stewart R , Thomson JA , Crawford GE , Kellis M , Ren B Submission date
Dec 19, 2008
Last update date
Oct 27, 2010
Contact name
Gary Chung Hon
Organization name
UT Southwestern
Department
OB/GYN
Street address
5323 Harry Hines Blvd.
City
Dallas
State/province
TX
ZIP/Postal code
75390
Country
USA
Samples (22)
GSM353322 , GSM664759 , GSM664760 , GSM664761 , GSM664762 , GSM664763
GSM664764 ,
GSM664765 ,
GSM664766 ,
GSM664767 ,
GSM664768 ,
GSM664769 ,
GSM664770 ,
GSM664771 ,
GSM664772 ,
GSM664773 ,
GSM664774 ,
GSM664775 ,
GSM664776 ,
GSM701854 ,
GSM701855 ,
GSM701856 Series (4)
GSE14083 Global Chromatin Modifications at Enhancers Correlate with Cell Type-Specific Gene Expression in the Human Genome
GSE26988 PU.1 and C/EBPalpha synergistically program distinct response to NF-kappaB activation through establishing monocyte-specific enhancers (ChIP-chip data)
GSE26994 PU.1 and C/EBPalpha synergistically program distinct response to NF-kappaB activation through establishing monocyte-specific enhancers
GSE28115 CBX3 Regulates Efficient RNA Processing Genome Wide
Data table header descriptions ID PROBE_DESIGN_ID
PROBE_ID SEQUENCE SEQUENCE UCSC hg18
CHROMOSOME RANGE_START RANGE_STRAND
Data table ID PROBE_ID SEQUENCE CHROMOSOME RANGE_START RANGE_STRAND 5952_1_1
CHR03FS187645887
AGTGATGGTGCAGAGTTATCCGAAGTAACTCCAGCTATGTTGTGGATCTT
chr3
187645887
+
5952_1_3
CHR03FS190703777
CCCACAATTTACCTGTGAGGTAGAGCAGTAATTCCTGCTGCCTGCAGTGA
chr3
190703777
+
5952_1_5
CHR03FS182536925
TTTTAAAGAGAGTATTAGTTAGTATTAGACATGTTAGTAATGAGTAGAGTATTATATA
chr3
182536925
+
5952_1_7
CHR03FS049437643
CCCACAACAGAGATGCCTCAAATCCCACAGAATACCCAGGAGGAAGATAA
chr3
049437643
+
5952_1_9
CHR04FS015817140
TTTGCTTGCTACAGACAGGGCTTAGACAGGGCTGTGGTGCTCCTGCTGAG
chr4
015817140
+
5952_1_11
CHR04FS004385461
TCTCAGCATTTCATGCAGGCTAAGCTGGCGACCTCATCAAAATGAACAGA
chr4
004385461
+
5952_1_13
CHR04FS042501932
TACTCTTTTATCCTTTTTTGCTGCCTTATGAGAGAGTTCACACATTATTCTTCATAGCTCAC
chr4
042501932
+
5952_1_15
CHR03FS179052632
CAACTGAAGGCATTCTCACTGATACCTACAATGCAGGATTGGATGAAGATCA
chr3
179052632
+
5952_1_17
CHR04FS026137669
TGCTGTTTGAGAGCCTGCTTACCTAATGTTTATGTACCTGGACTCTGAAG
chr4
026137669
+
5952_1_19
CHR03FS010250056
TATTTAGTATGTTTGTAACATTCATATATGCTAATCATATATACCATATTACTCATGAAATATACA
chr3
010250056
+
5952_1_21
CHR03FS078498856
AGTGACTTGTTTTATAATCTGACTGCATACAGGGTAGAGCTACCACCATGTTTGTTTGT
chr3
078498856
+
5952_1_23
CHR03FS145636389
TACAAAAACAGATGAAGTAATAAAGCAAAATAAATTGCACATGTTAATGGGACAAAA
chr3
145636389
+
5952_1_25
CHR03FS128572184
AAGTAATCATTATTAATGCACAAACCCACATCCTACTCACAGATGACTCTGGTGTACAAGTGA
chr3
128572184
+
5952_1_27
CHR03FS175696164
TACTGAATCCAGCTGTATGTCTTTTTCTGTTGCAGTTAAAATTTTTAGTACTTAATA
chr3
175696164
+
5952_1_29
CHR03FS030708490
TATTCCCAGGAAATTGGTTTTATTGGAGAACTCCAGAACCAAGCAGAGAAGGAA
chr3
030708490
+
5952_1_31
CHR03FS088449802
CTAAAAACTTTTCAGCATATCTTAGTCCTTGCCTCGCATTCCCAGGGTTTTCTGAA
chr3
088449802
+
5952_1_33
CHR03FS137406959
TTTGAATTAAAGCTTCCCTCTTCTATTCTCCAATATTGCCAAGTGCTTACCTCTTTC
chr3
137406959
+
5952_1_35
CHR03FS070833686
TGGTTACTTAGCCCAAATCTATTTCAGGCACAACAATTTCCGGTCTATCTGGAA
chr3
070833686
+
5952_1_37
CHR04FS032766657
ACTCCAGTTCCAAGAGCACAGTATCTATTTTATTCCAGTAAAAGTCTTCTTAATAA
chr4
032766657
+
5952_1_39
CHR04FS035985095
TCAGTCCTTGTCTATGGATGTAGGGCTGCTCTGGGTGAGGGCCTCTTTTA
chr4
035985095
+
2197815 220745 Kbytes .Supplementary data files not provided
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