|
| Status |
Public on Mar 01, 2009 |
| Title |
STAT1 K562 Nimblegen Economy HD2 Human tiling array of hg18 at 205bp resolution, set 01 of 4 |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
Chromatin immunoprecipitated DNA from K562 cells using STAT1 antibody
|
| Organism |
Homo sapiens |
| Characteristics |
cells: K562
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
NimbleGen
|
| Label |
Cy5
|
| Label protocol |
Cy3 input Cy5 ChIP sample
|
| |
|
| Channel 2 |
| Source name |
Input DNA from K562 cells
|
| Organism |
Homo sapiens |
| Characteristics |
cells: K562
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
NimbleGen
|
| Label |
Cy3
|
| Label protocol |
Cy3 input Cy5 ChIP sample
|
| |
|
| |
| Hybridization protocol |
NimbleGen
|
| Scan protocol |
NimbleGen
|
| Description |
Chromatin immunoprecipitation was performed using antibodies against STAT1 and formaldehyde crosslinked chromatin from K562 cells. The immunoprecipitated DNA was amplified, fluorescently labeled and hybridized to 12 sub-arrays on 4 physical arrays containing a total of 4 * 2.1 million 50 to 75-mer oligonucleotides
|
| Data processing |
raw data
|
| |
|
| Submission date |
Dec 21, 2008 |
| Last update date |
Jan 05, 2009 |
| Contact name |
Gary Chung Hon |
| Organization name |
UT Southwestern
|
| Department |
OB/GYN
|
| Street address |
5323 Harry Hines Blvd.
|
| City |
Dallas |
| State/province |
TX |
| ZIP/Postal code |
75390 |
| Country |
USA |
| |
|
| Platform ID |
GPL7874 |
| Series (1) |
| GSE14083 |
Global Chromatin Modifications at Enhancers Correlate with Cell Type-Specific Gene Expression in the Human Genome |
|
