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Status
Public on Mar 01, 2009
Title
Nimblegen 2.1M HD2 Human Economy tiling array of hg18 at 205bp resolution set 03 of 4
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Nimblegen Systems Inc.
Manufacture protocol
Whole human genome tiling arrays
Description
The 4 genome scan arrays were based on NCBI36 build of the human genome (hg18) and contained a total of 4 * 2.1 million 50 to 75-mer oligonucleotides, positioned at about every 205 basepairs (bp) throughout the human genome. There are a total of 3 arrays. This is set 03.
Web link
http://www.nimblegen.com/ Contributor(s)
Heintzman ND , Hon GC , Hawkins D , Kheradpour P , Stark A , Stuart RK , Harp LF , Ye Z , Lee L , Ching KA , Ching CW , Antosiewicz JE , Liu H , Zhang X , Green RD , Stewart R , Thomson JA , Crawford GE , Kellis M , Ren B Submission date
Dec 20, 2008
Last update date
Oct 27, 2010
Contact name
Gary Chung Hon
Organization name
UT Southwestern
Department
OB/GYN
Street address
5323 Harry Hines Blvd.
City
Dallas
State/province
TX
ZIP/Postal code
75390
Country
USA
Samples (22)
GSM353324 , GSM664795 , GSM664796 , GSM664797 , GSM664798 , GSM664799
GSM664800 ,
GSM664801 ,
GSM664802 ,
GSM664803 ,
GSM664804 ,
GSM664805 ,
GSM664806 ,
GSM664807 ,
GSM664808 ,
GSM664809 ,
GSM664810 ,
GSM664811 ,
GSM664812 ,
GSM701864 ,
GSM701865 ,
GSM701866 Series (4)
GSE14083 Global Chromatin Modifications at Enhancers Correlate with Cell Type-Specific Gene Expression in the Human Genome
GSE26988 PU.1 and C/EBPalpha synergistically program distinct response to NF-kappaB activation through establishing monocyte-specific enhancers (ChIP-chip data)
GSE26994 PU.1 and C/EBPalpha synergistically program distinct response to NF-kappaB activation through establishing monocyte-specific enhancers
GSE28115 CBX3 Regulates Efficient RNA Processing Genome Wide
Data table header descriptions ID PROBE_DESIGN_ID
PROBE_ID SEQUENCE SEQUENCE UCSC hg18
CHROMOSOME RANGE_START RANGE_STRAND
Data table ID PROBE_ID SEQUENCE CHROMOSOME RANGE_START RANGE_STRAND 5958_1_1
CHR12FS015004409
GGCTTGCCAGACACACACCTCAAGTTACCATAGGTCTAGAGTTTAATTACAGATTATGT
chr12
015004409
+
5958_1_3
CHR12FS117032825
AGGAGAGCAAAGAATTGATGGAAAAATATATGTCTGTGAAAGAACTAATGTAGGCTGGGCA
chr12
117032825
+
5958_1_7
CHR13FS034230737
ATAGCTGTGACTCCTTTCTTATACAATTTGTAGATAGAATAAAAATGAACTCACGCTCG
chr13
034230737
+
5958_1_9
CHR12FS129802496
TCAGTTCAGCTGGTCACGAACCGTGTCCCGCCACCTCAGAGCAGGCATGT
chr12
129802496
+
5958_1_11
CHR13FS083034396
ATCTTGTGTCAGGATTTTCACTATGCCTTGATGATTCTATTGGCTTACCTGTATTTTTCC
chr13
083034396
+
5958_1_13
CHR14FS019083010
ATATCCAACTCCAACTCTTCTAGAGATACCTTAAGTTTCTGAGATATAAGAATTTATA
chr14
019083010
+
5958_1_15
CHR13FS042288625
CAGCCACTGTGAACCAAATATCTGGCATTTTCTCCATTATTGTGTTTTTAAGCAACCTC
chr13
042288625
+
5958_1_17
CHR12FS050530344
GTTCTGGAACTTGCCAAGGTCAGTGTCTTTTCCACCTCCAGAATTATCTC
chr12
050530344
+
5958_1_19
CHR13FS024506304
TGCCATTGCTTCCTGCTTAGCAGAGAGGGGCCAGGAGGACCATTGAGGAG
chr13
024506304
+
5958_1_21
CHR12FS044069510
GAAAAGACAATTTGGTCATTTAAACCTGCCAATTTTATAGTTAAAATTGCCAGC
chr12
044069510
+
5958_1_23
CHR12FS031440579
AAAGACAGAGTCATGCTTGTTTCGGCAGCACATATACTAAAAAACTGGAACAATACAGAGA
chr12
031440579
+
5958_1_25
CHR12FS049062827
ATTTTTACAGAATTTACTTGTTTGCTTCAACTGTCTCCTTCTACCTCTGCTCTTGAA
chr12
049062827
+
5958_1_27
CHR12FS089373630
TACATTATCCTGAGTGCAATATGAAATAGAGGAGTCAAAACCACATGGAATTAATATTTAT
chr12
089373630
+
5958_1_29
CHR13FS049782314
AATAGAGGAAATGGAAGAGAAGAAAGAGAGTGATTTTCTTCATCCTGTCCTGGATCTG
chr13
049782314
+
5958_1_31
CHR12FS124487722
TGGCCTGCTCGTGGTGTGAACATTCCGATGCGCTGACTATGATTCTGATG
chr12
124487722
+
5958_1_33
CHR13FS032252175
CTTAATTATATAGTCCAAATCTTTACCAATTAACTACAACTTCTCAATCATTTGTC
chr13
032252175
+
5958_1_35
CHR12FS014105587
AAAGAATCATGCCCTAATACTTGCGCTGACCTACACATCCATCCCTGAGA
chr12
014105587
+
5958_1_37
CHR13FS113029824
ATAGAACCATCACAAACACTGACGCAACATCACGGTCCTGTCACTGCTTT
chr13
113029824
+
5958_1_39
CHR12FS062893213
AGAAAGACTATGTATGTATGTGGTTGTAGGTAGCACACAACTCGTATTCCTAGCAAGA
chr12
062893213
+
5958_1_41
CHR13FS113305634
CTGGACACACCCTGGCGGGTGCTGGCTGGCAAAGAGGGAGGCGTTGAGGG
chr13
113305634
+
2193515 221908 Kbytes .Supplementary data files not provided
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