|
Status |
Public on Mar 01, 2009 |
Title |
STAT1 K562 Nimblegen Economy HD2 Human tiling array of hg18 at 205bp resolution, set 03 of 4 |
Sample type |
genomic |
|
|
Channel 1 |
Source name |
Chromatin immunoprecipitated DNA from K562 cells using STAT1 antibody
|
Organism |
Homo sapiens |
Characteristics |
cells: K562
|
Extracted molecule |
genomic DNA |
Extraction protocol |
NimbleGen
|
Label |
Cy5
|
Label protocol |
Cy3 input Cy5 ChIP sample
|
|
|
Channel 2 |
Source name |
Input DNA from K562 cells
|
Organism |
Homo sapiens |
Characteristics |
cells: K562
|
Extracted molecule |
genomic DNA |
Extraction protocol |
NimbleGen
|
Label |
Cy3
|
Label protocol |
Cy3 input Cy5 ChIP sample
|
|
|
|
Hybridization protocol |
NimbleGen
|
Scan protocol |
NimbleGen
|
Description |
Chromatin immunoprecipitation was performed using antibodies against STAT1 and formaldehyde crosslinked chromatin from K562 cells. The immunoprecipitated DNA was amplified, fluorescently labeled and hybridized to 12 sub-arrays on 4 physical arrays containing a total of 4 * 2.1 million 50 to 75-mer oligonucleotides
|
Data processing |
raw data
|
|
|
Submission date |
Dec 21, 2008 |
Last update date |
Jan 05, 2009 |
Contact name |
Gary Chung Hon |
Organization name |
UT Southwestern
|
Department |
OB/GYN
|
Street address |
5323 Harry Hines Blvd.
|
City |
Dallas |
State/province |
TX |
ZIP/Postal code |
75390 |
Country |
USA |
|
|
Platform ID |
GPL7880 |
Series (1) |
GSE14083 |
Global Chromatin Modifications at Enhancers Correlate with Cell Type-Specific Gene Expression in the Human Genome |
|