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| Status |
Public on Jul 29, 2018 |
| Title |
Global gene-expression profiles of wild type (WT; Columbia-0; Col) and hag1 in the course of de novo shoot regeneration |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Global gene-expression profiles of WT and hag1 were generated by RNA seq to understand the role of HAG1 in de novo shoot regeneration.
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| Overall design |
WT and hag1 roots (R), 4 d CIM-incubated root explants (C), 4 d CIM-incubated + 2 d SIM (S)- and 2 w SIM (S2W)-incubated root explants were collected. Total RNA was isolated (OD260/280 ratio of 1.8 to 2.2) and RNA libraries were prepared by Beijing Genomics Institute (BGI) using standard Illumina protocols.
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| Contributor(s) |
Noh Y, Noh B, Kim J, Yang W |
| Citation(s) |
30061313 |
| Submission date |
Jul 09, 2017 |
| Last update date |
Jul 25, 2021 |
| Contact name |
Jiyun Kim |
| Organization name |
HHU
|
| Department |
Biology
|
| Lab |
Institute of Molecular Physiology
|
| Street address |
Universitätsstr. 1
|
| City |
Düsseldorf |
| ZIP/Postal code |
40225 |
| Country |
Germany |
| |
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| Platforms (1) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
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| Samples (8)
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| This SubSeries is part of SuperSeries: |
| GSE100967 |
Acquisition of Pluripotency by HAG1-mediated Epigenetic Reprogramming of Key Potency Factor-encoding Loci in Arabidopsis |
|
| Relations |
| BioProject |
PRJNA393559 |
| SRA |
SRP111396 |
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