|
| Status |
Public on Dec 10, 2017 |
| Title |
Polymerases IV and V affect Pol II transcription termination |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
Nuclear run-on assays reveal that in the absence of Pol IV or Pol V, Pol II occupancy downstream of poly A sites increases for approximately 12% of protein-coding genes.
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| |
|
| Overall design |
Analysis of nascent and steady-state RNA levels in pol IV (nrpd1-3) and pol V (nrpe1-11) mutant plants
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| |
|
| Contributor(s) |
McKinlay A, Podicheti R, Rusch DB, Cocklin R |
| Citation(s) |
29199514 |
| Submission date |
Jul 17, 2017 |
| Last update date |
Jul 25, 2021 |
| Contact name |
Ram Podicheti |
| Organization name |
Indiana University
|
| Street address |
1001 E 3rd St, JH 044
|
| City |
Bloomington |
| State/province |
IN |
| ZIP/Postal code |
47405 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
| GPL22012 |
AB 5500 Genetic Analyzer (Arabidopsis thaliana) |
|
| Samples (9)
|
|
| Relations |
| BioProject |
PRJNA394759 |
| SRA |
SRP112618 |
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