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Series GSE102984 Query DataSets for GSE102984
Status Public on Aug 21, 2019
Title ENAP1 is involoved in the EIN3- mediated ethylene response
Organism Arabidopsis thaliana
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We report that ethylene reduce the ENAP1 binding. We perform Chip-sequencing of ENAP1 using chromatins isolated from 3-day old etiolated ein3eil1 seedlings treated with ethylene or air gas. Results show that ethylene reduce ENAP1 binding in TSS region of EIN3 targeted genes that are regulated at the transcriptional level by ethylene.
 
Overall design Examination of 1 different protein binding in 1 Arabidopsis lines which under 2 different treatment.
 
Contributor(s) Qiao H, Wang L, Zhang F
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Aug 23, 2017
Last update date Aug 21, 2019
Contact name Hong Qiao
Organization name The University of Texas at Austin
Department Department of Molecular Biosciences
Lab Qiao lab
Street address 2506 speedway, NMS5.324
City Austin
State/province TEXAS
ZIP/Postal code 78731
Country USA
 
Platforms (1)
GPL13222 Illumina HiSeq 2000 (Arabidopsis thaliana)
Samples (8)
GSM2752165 ein3eil1_ENAP1_air_ChIPseq_rep1
GSM2752166 ein3eil1_ENAP1_air_ChIPseq_rep2
GSM2752167 ein3eil1_air_ENAP1_input rep1
Relations
BioProject PRJNA399697
SRA SRP116014

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE102984_macs2.optimal.50_46vsC17_C21.narrowPeak.gz 103.1 Kb (ftp)(http) NARROWPEAK
GSE102984_macs2.optimal.C24_C20vsC19_C23.narrowPeak.gz 79.7 Kb (ftp)(http) NARROWPEAK
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Raw data are available in SRA
Processed data are available on Series record

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