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| Status |
Public on Aug 21, 2019 |
| Title |
Genome-wide study reveals dual function of histone binding protein ENAP1 in ethylene signaling in ein3eil1 mutant plants |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Purpose: Next-generation sequencing (NGS) has been used to study the gene expression in different samples under air and ethylene treatment. The goal of this study is to uncover how ENAP1 and H3K23Ac dynamically coordinate with EIN3 to regulate gene expression in response to ethylene.
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| Overall design |
Whole seedling mRNA profiles of 3-day old ein3eil1 and ENAP1ox/ein3eil1 (in COL background) were generated by sequencing, in 2 replications, using Illumina HiSeq 2000
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| Contributor(s) |
Qiao H, Wang L, Zhang F |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Aug 23, 2017 |
| Last update date |
Aug 21, 2019 |
| Contact name |
Hong Qiao |
| Organization name |
The University of Texas at Austin
|
| Department |
Department of Molecular Biosciences
|
| Lab |
Qiao lab
|
| Street address |
2506 speedway, NMS5.324
|
| City |
Austin |
| State/province |
TEXAS |
| ZIP/Postal code |
78731 |
| Country |
USA |
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| Platforms (1) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
|
| Samples (8)
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| GSM2752186 |
ein3eil1 4 hour C2H4 RNAseq, rep2 |
| GSM2752187 |
ENAP1ox/ein3eil1 4 hour air RNAseq, rep1 |
| GSM2752188 |
ENAP1ox/ein3eil1 4 hour air RNAseq, rep2 |
| GSM2752189 |
ENAP1ox/ein3eil1 4 hour C2H4 RNAseq, rep1 |
| GSM2752190 |
ENAP1ox/ein3eil1 4 hour C2H4 RNAseq, rep2 |
|
| Relations |
| BioProject |
PRJNA399701 |
| SRA |
SRP116016 |
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