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Series GSE106718 Query DataSets for GSE106718
Status Public on Jul 16, 2020
Title Modeling SHH-driven medulloblastoma with patient iPS cell-derived neural stem cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Medulloblastoma is the most common malignant brain tumor in children. Here we describe a medulloblastoma model using iPS cell-derived human neuroepithelial stem (NES) cells generated from a Gorlin syndrome patient carrying a germline mutation in the Sonic hedgehog (SHH) receptor PTCH1. We found that Gorlin NES cells formed tumors in mouse cerebellum mimicking human medulloblastoma. Re-transplantation of tumor-isolated NES (tNES) cells resulted in accelerated tumor formation, cells with reduced growth factor dependency, enhanced neurosphere formation in vitro, and increased sensitivity to Vismodegib. Using our model we identified LGALS1 to be a GLI target gene that is upregulated in both Gorlin tNES cells and SHH-subgroup of medulloblastoma patients. Taken together, we demonstrate that NES cells derived from Gorlin patients can be used as a resource to model medulloblastoma initiation and progression, and to identify novel putative targets.
 
Overall design Examination of RNA expression in parental cells and cells derived from 3 primary tumors and 3 secondary tumors.
 
Contributor(s) Susanto E, Sundström A, Wilhelm M
Citation(s) 32747535
Submission date Nov 09, 2017
Last update date Sep 08, 2020
Contact name Margareta Wilhelm
Organization name Karolinska Institutet
Department Microbiology, Tumor and Cell biology (MTC)
Street address Nobels väg 16
City Stockholm
ZIP/Postal code 17177
Country Sweden
 
Platforms (1)
GPL17301 Ion Torrent PGM (Homo sapiens)
Samples (15)
GSM2849303 Ctrl NES 1
GSM2849304 Ctrl NES 2
GSM2849305 Ctrl NES 3
Relations
BioProject PRJNA417760
SRA SRP124704

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Supplementary file Size Download File type/resource
GSE106718_Expression_data.txt.gz 1.8 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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