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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jun 17, 2013 |
| Title |
Ion Torrent PGM (Homo sapiens) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Homo sapiens |
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| Submission date |
Jun 17, 2013 |
| Last update date |
Nov 28, 2017 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (2264)
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GSM1166038, GSM1166039, GSM1166040, GSM1166041, GSM1166042, GSM1166043
GSM1166047, GSM1166048, GSM1166049, GSM1166050, GSM1166053, GSM1166054, GSM1166055, GSM1166056, GSM1199823, GSM1199824, GSM1199825, GSM1199826, GSM1199827, GSM1199828, GSM1199829, GSM1199830, GSM1199831, GSM1199832, GSM1199833, GSM1213285, GSM1213286, GSM1213287, GSM1213288, GSM1275063, GSM1275064, GSM1275065, GSM1275066, GSM1366007, GSM1366008, GSM1366009, GSM1366010, GSM1366011, GSM1366012, GSM1381189, GSM1381190, GSM1418934, GSM1418935, GSM1418936, GSM1418937, GSM1418938, GSM1418939, GSM1418940, GSM1418941, GSM1418942, GSM1418943, GSM1418944, GSM1418945, GSM1442984, GSM1442985, GSM1470353, GSM1470354, GSM1470355, GSM1470356, GSM1470357, GSM1470358, GSM1517779, GSM1517780, GSM1517785, GSM1558744, GSM1576945, GSM1576946, GSM1587356, GSM1587357, GSM1587358, GSM1587359, GSM1587360, GSM1587361, GSM1633396, GSM1633397, GSM1633398, GSM1633399, GSM1636069, GSM1636070, GSM1636071, GSM1636072, GSM1639691, GSM1639692, GSM1639693, GSM1639694, GSM1639695, GSM1639696, GSM1639697, GSM1639698, GSM1639699, GSM1639700, GSM1639701, GSM1639702, GSM1657677, GSM1657679, GSM1668993, GSM1668994, GSM1668995, GSM1668996, GSM1668997, GSM1668998, GSM1668999, GSM1669000, GSM1817679, GSM1817680, GSM1887482, GSM1887483, GSM1887484, GSM1887485, GSM1887486, GSM1887487, GSM1887488, GSM1887489, GSM1910904, GSM1910905, GSM1910906, GSM1910907, GSM1910908, GSM1910909, GSM1910910, GSM1920196, GSM1920197, GSM1920198, GSM2036960, GSM2048867, GSM2048868, GSM2048869, GSM2048870, GSM2048871, GSM2048872, GSM2048873, GSM2048874, GSM2048875, GSM2048876, GSM2048877, GSM2048878, GSM2048879, GSM2048880, GSM2048881, GSM2048882, GSM2048883, GSM2048884, GSM2048885, GSM2048886, GSM2048887, GSM2048888, GSM2048889, GSM2048890, GSM2048891, GSM2048892, GSM2048893, GSM2048894, GSM2048895, GSM2048896, GSM2048897, GSM2048898, GSM2048899, GSM2048900, GSM2048901, GSM2048902, GSM2048903, GSM2048904, GSM2048905, GSM2048906, GSM2048907, GSM2048908, GSM2048909, GSM2048910, GSM2049177, GSM2049178, GSM2049179, GSM2049180, GSM2049181, GSM2049182, GSM2049183, GSM2049184, GSM2049185, GSM2049186, GSM2049187, GSM2049188, GSM2049189, GSM2075268, GSM2075270, GSM2075288, GSM2144783, GSM2144784, GSM2144785, GSM2147866, GSM2147867, GSM2147868, GSM2147869, GSM2147870, GSM2147871, GSM2186774, GSM2186775, GSM2186778, GSM2186779, GSM2186782, GSM2186783, GSM2186786, GSM2200841, GSM2200842, GSM2200843, GSM2200844, GSM2200845, GSM2200846, GSM2200847, GSM2200848, GSM2200849, GSM2200850, GSM2200851, GSM2200852, GSM2200853, GSM2200854, GSM2200855, GSM2200856, GSM2200857, GSM2200858, GSM2200859, GSM2200860, GSM2200861, GSM2200862, GSM2200863, GSM2200864, GSM2200865, GSM2200866, GSM2200867, GSM2200868, GSM2200869, GSM2200870, GSM2200871, GSM2200872, GSM2200873, GSM2200874, GSM2200875, GSM2200876, GSM2200877, GSM2200878, GSM2200879, GSM2200880, GSM2200881, GSM2200882, GSM2200883, GSM2200884, GSM2200885, GSM2200886, GSM2200887, GSM2200888, GSM2200889, GSM2200890, GSM2200891, GSM2200892, GSM2200893, GSM2200894, GSM2200895, GSM2200896, GSM2200897, GSM2200898, GSM2200899, GSM2200900, GSM2200901, GSM2200902, GSM2200903, GSM2200904, GSM2200905, GSM2200906, GSM2200907, GSM2200908, GSM2200909, GSM2200910, GSM2200911, GSM2200912, GSM2200913, GSM2200914, GSM2200915, GSM2200916, GSM2200917, GSM2200918, GSM2200919, GSM2200920, GSM2200921, GSM2200922, GSM2200923, GSM2200924, GSM2200925, GSM2200926, GSM2200927, GSM2200928, GSM2200929, GSM2200930, GSM2200931, GSM2200932, GSM2200933, GSM2200934, GSM2200935, GSM2200936, GSM2200937, GSM2200938, GSM2200939, GSM2200940, GSM2200941, GSM2200942, GSM2200943, GSM2200944, GSM2200945, GSM2200946, GSM2200947, GSM2212010, GSM2212011, GSM2212012, GSM2212013, GSM2212014, GSM2212015, GSM2212016, GSM2212017, GSM2212018, GSM2231427, GSM2231428, GSM2231429, GSM2243120, GSM2243121, GSM2243122, GSM2243123, GSM2243124, GSM2243125, GSM2243126, GSM2243127, GSM2243128, GSM2243129, GSM2340040, GSM2340041, GSM2340042, GSM2340043, GSM2340044, GSM2340045, GSM2340046, GSM2340047, GSM2340048, GSM2340049, GSM2340050, GSM2340051, GSM2340052, GSM2340053, GSM2340054, GSM2340055, GSM2340056, GSM2340057, GSM2340058, GSM2340059, GSM2340060, GSM2340061, GSM2340062, GSM2340063, GSM2340064, GSM2340065, GSM2340066, GSM2340067, GSM2340068, GSM2340069, GSM2340070, GSM2340071, GSM2340072, GSM2340073, GSM2340074, GSM2340075, GSM2340076, GSM2340077, GSM2340078, GSM2340079, GSM2340080, GSM2340081, GSM2340082, GSM2340083, GSM2340084, GSM2340085, GSM2340086, GSM2340087, GSM2394470, GSM2394471, GSM2394472, GSM2394473, GSM2394474, GSM2394475, GSM2394476, GSM2394477, GSM2394478, GSM2394479, GSM2394480, GSM2394481, GSM2394482, GSM2394483, GSM2394484, GSM2394485, GSM2394486, GSM2394487, GSM2394488, GSM2394489, GSM2394490, GSM2394491, GSM2394492, GSM2394493, GSM2394494, GSM2394495, GSM2394496, GSM2394497, GSM2394498, GSM2394499, GSM2394500, GSM2394501, GSM2394502, GSM2394503, GSM2394504, GSM2394505, GSM2394506, GSM2394507, GSM2394508, GSM2394509, GSM2394510, GSM2394511, GSM2394512, GSM2394513, GSM2394514, GSM2394515, GSM2394516, GSM2394517, GSM2394518, GSM2394519, GSM2394520, GSM2394521, GSM2394522, GSM2394523, GSM2394524, GSM2394525, GSM2394526, GSM2394527, GSM2394528, GSM2394529, GSM2394530, GSM2394531, GSM2394532, GSM2394533, GSM2394534, GSM2394535, GSM2394536, GSM2394537, GSM2394538, GSM2394539, GSM2394540, GSM2394541, GSM2394542, GSM2394543, GSM2394544, GSM2394545, GSM2394546, GSM2394547, GSM2394548, GSM2394549, GSM2394550, GSM2394551, GSM2394552, GSM2394553, GSM2394554, GSM2394555, GSM2394556, GSM2394557, GSM2394558, GSM2394559, GSM2394560, GSM2394561, GSM2394562, GSM2394563, GSM2394564, GSM2394565, GSM2394566, GSM2394567, GSM2394568, GSM2394569, GSM2394570, GSM2394571, GSM2394572, GSM2394573, GSM2420383, GSM2420384, GSM2471958, GSM2471959, GSM2471960, GSM2471961, GSM2471962, GSM2471963, GSM2471964, GSM2471965, GSM2471966, GSM2471967, GSM2471968, GSM2471969, GSM2471970, GSM2471971, GSM2471972, GSM2471973, GSM2471974...
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| Series (93)
|
| GSE46876 |
The ABRF Next-Generation Sequencing Study (ABRF-NGS): Multi-platform and cross-methodological reproducibility of transcriptome profiling by RNA-seq. |
| GSE48033 |
The ABRF Next-Generation Sequencing Study (ABRF-NGS): Multi-platform and cross-methodological reproducibility of transcriptome profiling by RNA-seq [Ion Torrent PGM] |
| GSE49477 |
Semiconductor based DNA sequencing of histone modification states |
| GSE50057 |
Small RNA deep sequencing of cellular subcompartments |
| GSE52734 |
Gene expression analysis of high-glucose stimulated human mesangial cells and tubular epithelial cells |
| GSE56625 |
Direct reprogramming of human mesenchymal stem cells into functional renal cells using cell-free extracts |
| GSE57363 |
QKI5-regulated miRNAs |
| GSE58737 |
Highly sensitive amplicon-based transcript quantification by semi-conductor sequencing |
| GSE59694 |
ChIP-seq analysis of LSD2/DNA interaction in HepG2 cells in normal condition |
| GSE59695 |
Role of histone lysine demethylase LSD2 in hepatic metabolism |
| GSE60292 |
RNA Expression Profiling of Human iPSC-Derived Cardiomyocytes in a Cardiac Hypertrophy Model [miRNA expression] |
| GSE60293 |
RNA Expression Profiling of Human iPSC-Derived Cardiomyocytes in a Cardiac Hypertrophy Model |
| GSE61968 |
Semiconductor-based sequencing of genome-wide DNA methylation states |
| GSE63871 |
Smad2 and Smad3 binding sites in H345-TbRII cells |
| GSE64693 |
Next generation sequencing of A375 melanoma cell line revealed a complex regulatory network when IGFBP5 overexpressed |
| GSE65105 |
Effect of 4hr cortistatin A treatment on gene expression in SET2 cells. |
| GSE65161 |
Mediator kinase inhibition further activates super-enhancer-associated genes in AML |
| GSE66148 |
RNA Sequencing of default, melanocyte biased and enteric human neural crest populations (NC) and neuroectoderm (CNS) |
| GSE66859 |
MAGE-A1 Promotes Proliferation, Migration and Invasion of Human Melanoma Cells through RNA-SEQ Analysis via Affecting C-JUN-IL8-ARHGAP29 Network |
| GSE67124 |
RNA-seq Analysis of Control DPSC and DPSC Derived Neurons |
| GSE67898 |
Reversal of persistent wound-induced retinal pigmented epithelial-to-mesenchymal transition by the TGFb pathway inhibitor, A-83-01. |
| GSE67899 |
Delay and restoration of persistent wound-induced retinal pigmented epithelial-to-mesenchymal transition by TGF-beta pathway inhibitors: Implications for age-related macular degeneration |
| GSE68353 |
Mutant p53R273H regulated microRNA profiling in presence and absence of DNA damage in H1299 cells |
| GSE70764 |
Comparative analyses of CTCF and BORIS occupancies uncover two distinct classes of CTCF binding genomic regions |
| GSE73128 |
Mutations in histone and other genes in MLL2-impaired human and mouse cells |
| GSE73130 |
Mutation of cancer driver MLL2 results in transcription stress and genome instability |
| GSE74126 |
Rapid and affordable genome-wide bisulfite DNA sequencing by XmaI-RRBS |
| GSE74420 |
DNA methylation variation of human-specific Alu repeats |
| GSE76735 |
Detection of plant microRNAs in EVOO and plasma samples of healthy volunteers 2 hours postingestion of 40 mL of EVOO. |
| GSE77312 |
Profiling of epithelial and stromal cells in early proximal colon preneoplasia with matched normals. |
| GSE77318 |
Ion Torrent RNA-sequencing of exosomes isolated from ovarian cancer cells, fibroblasts and adipocytes |
| GSE78740 |
Restoration of mesenchymal RPE by transcription factor-mediated reprogramming |
| GSE81216 |
SpermBase - A database for sperm-borne RNA contents |
| GSE81265 |
Next-Generation Sequencing reveals the effects of MYC silencing in gastric cancer cell lines from northern Brazil |
| GSE82226 |
Differential RNA Interactions with Heterogeneous Nuclear Ribonucleoproteins During Vesicular Stomatitis Virus Infection |
| GSE83392 |
Molecular phenotyping of antisense oligonucleotides (ASOs) in immortalized proximal tubule epithelial cells (PTEC-TERT1) |
| GSE83657 |
TBX5-KO RNA-seq |
| GSE83788 |
SMAD2/3 are redirected to novel sites in MCF10A MII after prolonged TGFβ stimulation |
| GSE84320 |
RNA-Seq analysis of human medulloblastoma cell lines with SOX9 overexpression |
| GSE84631 |
RNA-seq analysis of mitochondrial stress |
| GSE87768 |
Circulating miRNA Associated with Posttraumatic Stress Disorder in a Cohort of Military Combat Veterans |
| GSE89972 |
Molecular phenotyping empowers drug discovery: a proof-of-concept study |
| GSE91063 |
Single-cell Gene Expression Analysis Reveals Transcriptional Diversity among Human Spermatogonia |
| GSE94267 |
Molecular and Functional Resemblance of Terminally Differentiated Cells Derived from Isogenic Human iPSCs and Somatic Cell Nuclear Transfer Derived ESCs |
| GSE99744 |
Sequencing Facilitates Quantitative Analysis of gene expression among 3 stromal cell populations: NAF, CAF, CAF_HiP |
| GSE99949 |
Next-generation sequencing of matched ectopic and eutopic endometrium identifies novel endometriosis-related genes and highlights the role of general metabolism |
| GSE104352 |
SMAD2/3 binding pattern in triple-negative breast cancer cell lines, Hs578T and BT549 [ChIP-seq] |
| GSE104682 |
SMAD1/5 binding pattern in human pulmonary arterial endothelial cells [ChIP-seq] |
| GSE104685 |
The analysis of the role of ALK-1/SMAD/ATOH8 axis in endothelial cells |
| GSE106718 |
Modeling SHH-driven medulloblastoma with patient iPS cell-derived neural stem cells |
| GSE106725 |
MYCN Drives Disparate Medulloblastoma from Human Embryonic and iPSC-Derived Stem Cells [seq] |
| GSE106728 |
MYCN Drives Disparate Medulloblastoma from Human Embryonic and iPSC-Derived Stem Cells |
| GSE107405 |
Combined BET bromodomain and CDK2 inhibition in MYC-driven medulloblastoma |
| GSE108403 |
ENPP6 as a neural regulator of visceral adiposity |
| GSE109515 |
The Genomic Research in Alpha-1 Antitrypsin Deficiency and Sarcoidosis Study (GRADS) Alpha-1 study [A1AT] |
| GSE109516 |
The Genomic Research in Alpha-1 Antitrypsin Deficiency and Sarcoidosis Study (GRADS) Sarcoidosis study [Sarc] |
| GSE113642 |
Reprogrammed marrow adipocytes: an unexpected role in the genesis of myeloma-induced bone disease (ChIP-Seq) |
| GSE115747 |
CLIP-seq diagram of ZAP-binding RNA mapped to JEV genome |
| GSE118216 |
lncRNA sequencing of human ovarian cancer cell SKOV3 after exposure to ginsenoside 20(S)-Rg3 |
| GSE118511 |
GBA1 regulates the CLEAR network through Calcineurin and TFEB in cellular models of Parkinson´s disease |
| GSE118996 |
Sequencing of DNA from the biotinylated chromatin from HeLa S3 clonal cell line |
| GSE119765 |
tRFs quantification in HaCaT cell culture |
| GSE122799 |
Genome wide DNA methylation sequencing by XmaI-RRBS resolves breast cancer epigenetic heterogeneity and suggests novel perspectives for personalized therapy |
| GSE123712 |
XmaI-RRBS on triple negative breast carcinoma samples taken prior to chemotherapy |
| GSE123828 |
XmaI-RRBS on Luminal B breast carcinoma samples taken prior to chemotherapy |
| GSE124282 |
Primary mid-trimester and term human cytotrophoblast, untreated [RNA-Seq] |
| GSE128881 |
Characterization of GJB2 cis-regulatory elements in the DFNB1 locus |
| GSE129676 |
Using Human Induced Pluripotent Stem Cell-Derived Cardiomyocytes as a Model to Study Trypanosoma cruzi Infection |
| GSE130612 |
Multi-omics analysis of neuroblastoma cells reveals a diversity of malignant transformations |
| GSE131236 |
Ampli-seq of iPSC-CMs cultured until day 30 and long-term until day 90 and day 200 |
| GSE136829 |
Transcriptomic analysis of Glioblastoma Multiform (GBM) neurospheres treated with BMI1 inhibitors. |
| GSE138265 |
Persistent epigenetic memory impedes rescue of the telomeric phenotype in human ICF iPSCs following DNMT3B correction. |
| GSE138942 |
BET and Aurora Kinase A Inhibitors Synergize against MYCN-positive Human Glioblastoma Cells |
| GSE141327 |
Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and CANT1 Overexpression Retinoblastoma Transcriptomes |
| GSE142217 |
HIF1α Regulates Early Metabolic Changes Due to Activation of Innate Immunity in Nuclear Reprogramming |
| GSE143694 |
Monitoring the differential expression of miRNAs, tRNAs and tRFs in lung cancer biopsies. |
| GSE144221 |
DNA methylation markers panel can improve prediction of response to neoadjuvant chemotherapy in luminal B breast cancer |
| GSE146023 |
Characterization of gene expression patterns among PXB-cells, cryopreserved primary human hepatocytes, HepaRG cells, HepG2 cells, and total human liver tissue |
| GSE149545 |
Limited Cell Fluorescence Activated Cell-sort Sequencing (LC-FACSeq) is a method for detecting rare clones in leukemia |
| GSE154580 |
Characterization of gene expression patterns among human iPS cell-derived cardiomyocytes, iPS cells, fetal human heart tissue and adult human heart tissue |
| GSE157511 |
HIV cell-to-cell spread slows evolution of drug resistance |
| GSE157895 |
Transcriptomic and epigenetic analysis of iPSC-endothelial cells treated with statin |
| GSE160314 |
Targeted RNA-seq signature of Breast Cancer Circulating Tumor Cells correlates with occurrence of bone-only metastases |
| GSE162812 |
Small molecule activation of a pseudoexon triggers huntingtin-lowering (AmpliSeq) |
| GSE162814 |
Small molecule activation of a pseudoexon triggers huntingtin-lowering |
| GSE163103 |
Transcriptional alterations in human keratinocytes induced by a novel synthetic atRA-polyamine conjugate (miRNA-Seq) |
| GSE169500 |
Spatial transcriptome profiling identifies CREB1 as a regulator of core transcriptional programs in idiopathic pulmonary fibrosis |
| GSE180252 |
ChIP-seq and RNA-seq of Human progenitor epidermal keratinocytes (HPEK) and HaCaT cells |
| GSE189303 |
Smad3 binding regions in human epidermal keratinocytes (HaCaT). |
| GSE190126 |
Genome-wide bisulfite sequencing (Xmal-RRBS) of 50 breast cancer samples for jointly using with NGS and chromosomal microarray data |
| GSE202402 |
Xmal-RRBS on breast carcinoma samples taken before and after neoadjuvant chemotherapy |
| GSE220475 |
Selective Vulnerability of hiPSCs to DHODH Inhibition during Mesenchymal Stem/Stromal Cell Purification |
| GSE248355 |
GPRC5A regulates keratinocyte adhesion and migration through nuclear translocation of its C-terminus region |
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| Supplementary data files not provided |
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